Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   H0S58_RS07240 Genome accession   NZ_CP059079
Coordinates   1563028..1563417 (-) Length   129 a.a.
NCBI ID   WP_195727577.1    Uniprot ID   -
Organism   Acinetobacter sp. TTH0-4 strain 1BD1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1558028..1568417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S58_RS07210 (H0S58_07210) tadA 1558177..1558698 (-) 522 WP_195726142.1 tRNA adenosine(34) deaminase TadA -
  H0S58_RS07215 (H0S58_07215) - 1558695..1559825 (-) 1131 WP_195726143.1 enoyl-CoA hydratase/isomerase family protein -
  H0S58_RS07220 (H0S58_07220) ung 1559822..1560535 (-) 714 WP_092718937.1 uracil-DNA glycosylase -
  H0S58_RS07225 (H0S58_07225) - 1560581..1561177 (-) 597 WP_053578070.1 6-pyruvoyl trahydropterin synthase family protein -
  H0S58_RS07230 (H0S58_07230) gspK 1561336..1562283 (-) 948 WP_195726144.1 type II secretion system minor pseudopilin GspK -
  H0S58_RS07235 (H0S58_07235) xcpW 1562321..1562947 (-) 627 WP_227592271.1 type II secretion system minor pseudopilin GspJ Machinery gene
  H0S58_RS07240 (H0S58_07240) xcpV 1563028..1563417 (-) 390 WP_195727577.1 type II secretion system minor pseudopilin GspI Machinery gene
  H0S58_RS07245 (H0S58_07245) - 1563518..1564078 (-) 561 WP_195726146.1 type II secretion system protein -
  H0S58_RS07250 (H0S58_07250) - 1564088..1564702 (-) 615 WP_195727578.1 TetR/AcrR family transcriptional regulator -
  H0S58_RS07255 (H0S58_07255) - 1564748..1565521 (-) 774 WP_195726147.1 TatD family hydrolase -
  H0S58_RS07260 (H0S58_07260) - 1565548..1565889 (-) 342 WP_195726148.1 PilZ domain-containing protein -
  H0S58_RS07265 (H0S58_07265) - 1565909..1566892 (-) 984 WP_195727579.1 DNA polymerase III subunit delta' -
  H0S58_RS07270 (H0S58_07270) kdsB 1566943..1567704 (-) 762 WP_195726149.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14241.42 Da        Isoelectric Point: 9.6936

>NTDB_id=467044 H0S58_RS07240 WP_195727577.1 1563028..1563417(-) (xcpV) [Acinetobacter sp. TTH0-4 strain 1BD1]
MLRSRRALGFTLLEVMVALAIFATAAIALTKVAMQYTQATANAILRTKAQFVALNEVANMEINQEWLQGTQSEQSTQQGE
VWQIDKSAQSTISPNVQRIEVQVSLLNVDSGKVQAGITHLVFFNYKAKV

Nucleotide


Download         Length: 390 bp        

>NTDB_id=467044 H0S58_RS07240 WP_195727577.1 1563028..1563417(-) (xcpV) [Acinetobacter sp. TTH0-4 strain 1BD1]
ATGCTTAGATCTCGTCGTGCTTTAGGATTTACTCTACTTGAAGTCATGGTGGCGTTGGCTATTTTTGCCACTGCCGCAAT
TGCTCTGACAAAAGTGGCAATGCAATATACTCAAGCCACTGCAAATGCAATTTTACGGACGAAAGCACAATTTGTCGCTT
TAAATGAAGTGGCGAATATGGAAATCAATCAAGAGTGGTTGCAAGGAACACAATCAGAACAAAGCACACAGCAGGGAGAA
GTGTGGCAAATTGATAAATCTGCGCAATCCACCATTAGTCCAAATGTACAGCGTATAGAAGTACAAGTGAGCTTATTGAA
TGTAGACTCAGGAAAAGTGCAAGCAGGAATTACGCATCTAGTTTTTTTTAACTACAAGGCTAAAGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(46-104)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

80.488

95.349

0.767