Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   H0S58_RS06265 Genome accession   NZ_CP059079
Coordinates   1359564..1360517 (-) Length   317 a.a.
NCBI ID   WP_195727464.1    Uniprot ID   -
Organism   Acinetobacter sp. TTH0-4 strain 1BD1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1352717..1366621 1359564..1360517 within 0


Gene organization within MGE regions


Location: 1352717..1366621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S58_RS06225 (H0S58_06225) - 1352717..1353100 (-) 384 Protein_1200 IclR family transcriptional regulator C-terminal domain-containing protein -
  H0S58_RS06230 (H0S58_06230) - 1353098..1353843 (+) 746 Protein_1201 GlxA family transcriptional regulator -
  H0S58_RS13890 - 1354410..1354880 (-) 471 WP_265088219.1 transposase family protein -
  H0S58_RS13895 - 1354828..1355286 (-) 459 WP_265088218.1 transposase family protein -
  H0S58_RS06240 (H0S58_06240) - 1355293..1355841 (+) 549 WP_195727570.1 DUF4385 domain-containing protein -
  H0S58_RS06245 (H0S58_06245) - 1356265..1356528 (+) 264 WP_053577924.1 TIGR03643 family protein -
  H0S58_RS06250 (H0S58_06250) - 1356900..1357850 (-) 951 WP_195727462.1 siderophore ABC transporter substrate-binding protein -
  H0S58_RS06255 (H0S58_06255) - 1357860..1358624 (-) 765 WP_092721029.1 ABC transporter ATP-binding protein -
  H0S58_RS06260 (H0S58_06260) - 1358609..1359571 (-) 963 WP_195727463.1 iron chelate uptake ABC transporter family permease subunit -
  H0S58_RS06265 (H0S58_06265) ceuB 1359564..1360517 (-) 954 WP_195727464.1 ABC transporter permease Machinery gene
  H0S58_RS06270 (H0S58_06270) - 1361646..1363808 (+) 2163 WP_195727465.1 TonB-dependent siderophore receptor -
  H0S58_RS06275 (H0S58_06275) - 1363856..1365089 (-) 1234 Protein_1211 IS3 family transposase -
  H0S58_RS13790 - 1365391..1365501 (-) 111 WP_092721025.1 hypothetical protein -
  H0S58_RS13900 - 1365745..1366203 (+) 459 WP_265088218.1 transposase family protein -
  H0S58_RS13905 - 1366151..1366621 (+) 471 WP_265088219.1 transposase family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34615.85 Da        Isoelectric Point: 9.6783

>NTDB_id=467042 H0S58_RS06265 WP_195727464.1 1359564..1360517(-) (ceuB) [Acinetobacter sp. TTH0-4 strain 1BD1]
MIKCRYLLALLLPFALISLFVGVGNMSWQGLLNGQIQDWQIFWTSRFPRLMAIVVAGAGLSVCGLIMQTLTRNRFVSPTT
AGLYDCARLGVLVSIILIPTASIFLKTGFAIGVTLLGALAFMGILSTLKHRDTVFVPLVGMIFGSIISAFTTFIALQMDF
LQSLSGWLQGDFSTILNGQYELIYFSVPILVLIYIFANRFLLAGLGEDFAVNLGLNYKKTLFVGLALVSVITGVVIITVG
AIPFLGLIVPNIVSLYLGDNLRKTLPHTALLGALLVLMCDIFGRVVIYPYEIPISLIMGVLGSVIFLALLIRKYRHV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=467042 H0S58_RS06265 WP_195727464.1 1359564..1360517(-) (ceuB) [Acinetobacter sp. TTH0-4 strain 1BD1]
ATGATTAAATGCCGCTACCTGTTGGCTTTATTATTACCATTTGCGCTGATTTCCTTATTTGTCGGAGTCGGCAATATGAG
TTGGCAAGGCTTATTAAATGGGCAAATACAAGACTGGCAAATTTTTTGGACCAGTCGTTTTCCACGTTTAATGGCGATCG
TTGTAGCAGGTGCAGGATTAAGTGTTTGTGGGCTAATTATGCAAACATTGACGCGTAATCGTTTTGTATCTCCTACTACA
GCAGGGCTTTATGACTGCGCGCGTCTAGGAGTATTGGTTTCAATTATTCTAATCCCTACAGCATCTATATTTTTAAAAAC
TGGATTCGCGATTGGAGTGACTCTGCTTGGTGCATTGGCATTTATGGGCATTTTATCAACATTAAAACATCGAGATACTG
TATTTGTACCATTGGTAGGCATGATCTTTGGCAGCATTATTTCAGCTTTTACTACATTTATTGCATTACAAATGGATTTT
CTACAAAGCCTCTCAGGTTGGTTACAAGGTGATTTTTCCACTATTCTCAATGGACAATATGAACTGATTTATTTCAGTGT
CCCAATACTCGTATTAATTTATATTTTCGCAAACCGATTTTTACTTGCAGGTTTAGGCGAAGATTTTGCTGTTAATCTAG
GCTTAAATTATAAAAAAACCTTATTCGTTGGCTTAGCTTTAGTATCTGTAATCACAGGTGTAGTCATTATTACTGTGGGA
GCAATTCCTTTCCTTGGTCTCATTGTTCCAAATATTGTCAGCTTATATCTAGGCGATAATTTACGTAAAACCTTACCTCA
CACAGCTTTGTTAGGGGCCTTATTGGTATTAATGTGCGACATTTTTGGTAGAGTTGTTATTTATCCTTATGAAATTCCTA
TTAGCTTAATTATGGGCGTATTGGGTAGCGTAATTTTCCTTGCACTACTGATTAGGAAATATCGCCATGTCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.321

98.423

0.495