Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   H0S58_RS02040 Genome accession   NZ_CP059079
Coordinates   424178..425056 (+) Length   292 a.a.
NCBI ID   WP_195726990.1    Uniprot ID   -
Organism   Acinetobacter sp. TTH0-4 strain 1BD1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419178..430056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S58_RS02010 (H0S58_02010) wrbA 419943..420539 (+) 597 WP_195726988.1 NAD(P)H:quinone oxidoreductase -
  H0S58_RS02015 (H0S58_02015) - 420587..420973 (-) 387 WP_053579537.1 hypothetical protein -
  H0S58_RS02020 (H0S58_02020) - 421186..421548 (-) 363 WP_212772141.1 VOC family protein -
  H0S58_RS02025 (H0S58_02025) - 421717..422292 (-) 576 WP_053579538.1 xanthine phosphoribosyltransferase -
  H0S58_RS02030 (H0S58_02030) - 422383..423096 (-) 714 WP_193889621.1 DUF3108 domain-containing protein -
  H0S58_RS02035 (H0S58_02035) - 423252..423941 (-) 690 WP_195726989.1 hypothetical protein -
  H0S58_RS02040 (H0S58_02040) tonB2 424178..425056 (+) 879 WP_195726990.1 energy transducer TonB Machinery gene
  H0S58_RS02045 (H0S58_02045) - 425105..425503 (-) 399 WP_195726991.1 hypothetical protein -
  H0S58_RS02050 (H0S58_02050) ybeY 425603..426082 (-) 480 WP_053579543.1 rRNA maturation RNase YbeY -
  H0S58_RS02055 (H0S58_02055) - 426091..427197 (-) 1107 WP_053579544.1 PhoH family protein -
  H0S58_RS02060 (H0S58_02060) miaB 427235..428689 (-) 1455 WP_195726992.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33311.05 Da        Isoelectric Point: 9.1575

>NTDB_id=467036 H0S58_RS02040 WP_195726990.1 424178..425056(+) (tonB2) [Acinetobacter sp. TTH0-4 strain 1BD1]
MLKKISFAPFMHAWWKDPVFSSAVILAVVLHLIVLTLQFAMPQESDAAVKEIAVTLRPSKDQIKNADFLAQADQQGSGTF
REAHRMSSDMPAAELEQTAGEQEQETLERLQQKSELSFEEKVLMTTLSWKKEAEQNQRKKAMQALNSQFQAKAAMVASLE
AQYLQRQQNFSRQQKIKTVDGIQAKRDISAAYLEKFRQKVEFYGNRYYPDTAKEQRLAGEVRLMVILNKNGGIRALRLIE
SSGHPVLDEAAKTSVRKAAPFGDFEQNMKDISELRVVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 879 bp        

>NTDB_id=467036 H0S58_RS02040 WP_195726990.1 424178..425056(+) (tonB2) [Acinetobacter sp. TTH0-4 strain 1BD1]
ATGCTTAAAAAAATTAGTTTTGCACCTTTTATGCATGCATGGTGGAAAGACCCTGTTTTTAGCAGTGCCGTTATTTTGGC
TGTAGTTCTGCATTTGATTGTTTTAACCTTACAGTTTGCAATGCCACAAGAAAGCGATGCAGCAGTCAAAGAAATTGCAG
TAACTTTACGCCCAAGTAAAGATCAAATTAAAAATGCAGATTTTTTGGCACAGGCTGATCAGCAGGGTTCAGGCACATTT
CGTGAGGCACATCGTATGTCAAGTGATATGCCGGCTGCTGAACTTGAACAGACTGCGGGTGAGCAAGAACAAGAAACTTT
AGAGCGTTTACAACAAAAAAGTGAACTCAGCTTTGAGGAAAAGGTTTTAATGACCACCCTCAGTTGGAAAAAAGAAGCGG
AACAAAATCAACGTAAAAAGGCCATGCAAGCATTAAATAGCCAGTTTCAGGCCAAAGCTGCAATGGTCGCCAGTCTTGAA
GCACAATATTTACAACGTCAGCAAAACTTTAGCCGTCAGCAAAAAATTAAAACAGTCGATGGCATTCAAGCTAAACGAGA
TATTTCTGCAGCATATTTAGAAAAATTTCGGCAGAAAGTCGAGTTCTACGGCAACCGTTATTATCCTGATACTGCAAAAG
AGCAACGTTTAGCTGGTGAAGTTCGTTTAATGGTCATCTTAAATAAAAATGGCGGTATTCGCGCACTGCGTTTAATTGAA
AGTTCAGGGCATCCAGTTTTAGATGAAGCTGCTAAAACTTCGGTGCGCAAGGCTGCGCCATTTGGTGATTTTGAGCAAAA
TATGAAGGATATTTCAGAGCTTCGGGTTGTACGAACGTGGCGTTTCGATCCTGCTGAAGCTGAATTTGAAGTGCATTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(205-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

71.525

100

0.723