Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   H0S58_RS01000 Genome accession   NZ_CP059079
Coordinates   212503..212829 (+) Length   108 a.a.
NCBI ID   WP_195726904.1    Uniprot ID   -
Organism   Acinetobacter sp. TTH0-4 strain 1BD1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 207503..217829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S58_RS00975 (H0S58_00975) hemC 208182..209099 (+) 918 WP_053579354.1 hydroxymethylbilane synthase -
  H0S58_RS00980 (H0S58_00980) - 209100..209879 (+) 780 WP_195726900.1 uroporphyrinogen-III synthase -
  H0S58_RS00985 (H0S58_00985) - 209876..210718 (+) 843 WP_195726901.1 hypothetical protein -
  H0S58_RS00990 (H0S58_00990) - 210726..211919 (+) 1194 WP_195726902.1 heme biosynthesis protein HemY -
  H0S58_RS00995 (H0S58_00995) - 211931..212359 (+) 429 WP_195726903.1 acyl-CoA thioesterase -
  H0S58_RS01000 (H0S58_01000) hns 212503..212829 (+) 327 WP_195726904.1 H-NS family nucleoid-associated regulatory protein Regulator
  H0S58_RS01005 (H0S58_01005) gspN 213000..213746 (+) 747 WP_053579360.1 type II secretion system protein N -
  H0S58_RS01010 (H0S58_01010) - 213743..214588 (+) 846 WP_053579361.1 type II secretion system protein N -
  H0S58_RS01015 (H0S58_01015) gspD 214628..216895 (+) 2268 WP_195726905.1 type II secretion system secretin GspD -
  H0S58_RS01020 (H0S58_01020) - 216965..217693 (+) 729 WP_195726906.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12218.96 Da        Isoelectric Point: 6.4156

>NTDB_id=467028 H0S58_RS01000 WP_195726904.1 212503..212829(+) (hns) [Acinetobacter sp. TTH0-4 strain 1BD1]
MMPDISNLSVEELKRLQVEAEALIVSKKDQAIEDAYQKIADIADDVGLSIEQILEFGATKRKKTVRKSVEPRYRSKNNGA
DTWTGRGKKPRWLVAELENGSKLDDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=467028 H0S58_RS01000 WP_195726904.1 212503..212829(+) (hns) [Acinetobacter sp. TTH0-4 strain 1BD1]
ATGATGCCAGATATTAGTAATTTATCTGTTGAAGAGTTAAAGCGTTTGCAAGTTGAAGCAGAAGCGTTAATTGTCTCTAA
AAAAGATCAAGCGATTGAAGATGCTTATCAAAAAATTGCAGATATTGCTGATGACGTAGGTTTGTCGATTGAACAAATTT
TAGAATTTGGTGCGACTAAACGTAAAAAGACGGTTCGTAAATCTGTAGAGCCGCGTTATCGCAGTAAAAATAATGGAGCA
GACACTTGGACTGGTCGTGGCAAAAAACCACGTTGGTTGGTTGCAGAGCTGGAAAATGGTTCAAAATTGGATGATTTTTT
GATTTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

77.778

100

0.778