Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I6J86_RS18280 Genome accession   NZ_CP069451
Coordinates   3854395..3855132 (+) Length   245 a.a.
NCBI ID   WP_000197692.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1256     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3849395..3860132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J86_RS18265 (I6J86_18265) clpC 3849849..3852422 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  I6J86_RS18270 (I6J86_18270) yfiH 3852552..3853283 (-) 732 WP_000040138.1 purine nucleoside phosphorylase YfiH -
  I6J86_RS18275 (I6J86_18275) rluD 3853280..3854260 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I6J86_RS18280 (I6J86_18280) comL 3854395..3855132 (+) 738 WP_000197692.1 outer membrane protein assembly factor BamD Machinery gene
  I6J86_RS18285 (I6J86_18285) raiA 3855402..3855743 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  I6J86_RS18290 (I6J86_18290) pheL 3855847..3855894 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  I6J86_RS18295 (I6J86_18295) pheA 3855993..3857153 (+) 1161 WP_000200091.1 bifunctional chorismate mutase/prephenate dehydratase -
  I6J86_RS18300 (I6J86_18300) tyrA 3857196..3858317 (-) 1122 WP_000225234.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  I6J86_RS18305 (I6J86_18305) aroF 3858328..3859398 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  I6J86_RS18310 (I6J86_18310) yfiL 3859608..3859973 (+) 366 WP_001298694.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27928.53 Da        Isoelectric Point: 7.1589

>NTDB_id=467028 I6J86_RS18280 WP_000197692.1 3854395..3855132(+) (comL) [Escherichia coli strain FDAARGOS_1256]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQRFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=467028 I6J86_RS18280 WP_000197692.1 3854395..3855132(+) (comL) [Escherichia coli strain FDAARGOS_1256]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAAGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376