Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPKB_RS00100 Genome accession   NC_017354
Coordinates   14095..14358 (+) Length   87 a.a.
NCBI ID   WP_000584979.1    Uniprot ID   -
Organism   Helicobacter pylori 52     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 9095..19358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPKB_RS00075 (HPKB_0014) groES 9392..9748 (-) 357 WP_000671953.1 co-chaperone GroES -
  HPKB_RS00080 (HPKB_0015) dnaG 10023..11703 (+) 1681 Protein_9 DNA primase -
  HPKB_RS00085 (HPKB_0016) - 11700..12752 (+) 1053 WP_000721154.1 MnmA/TRMU family protein -
  HPKB_RS00090 (HPKB_0017) - 12842..13669 (+) 828 WP_001154915.1 DUF5718 family protein -
  HPKB_RS00095 (HPKB_0018) comB2 13814..14095 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPKB_RS00100 (HPKB_0019) comB3 14095..14358 (+) 264 WP_000584979.1 hypothetical protein Machinery gene
  HPKB_RS00105 (HPKB_0020) comB4 14361..16724 (+) 2364 WP_000890535.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPKB_RS00110 (HPKB_0021) - 17046..18386 (+) 1341 WP_042348982.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10104.19 Da        Isoelectric Point: 9.5741

>NTDB_id=46702 HPKB_RS00100 WP_000584979.1 14095..14358(+) (comB3) [Helicobacter pylori 52]
MIILSASVRNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=46702 HPKB_RS00100 WP_000584979.1 14095..14358(+) (comB3) [Helicobacter pylori 52]
ATGATTATCCTGTCAGCGAGCGTGAGGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

95.402

100

0.954

Multiple sequence alignment