Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   H0S59_RS08610 Genome accession   NZ_CP059078
Coordinates   1843494..1843874 (+) Length   126 a.a.
NCBI ID   WP_004887479.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain WM98B     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1838494..1848874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S59_RS08580 (H0S59_08580) kdsB 1839399..1840160 (+) 762 WP_004887485.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H0S59_RS08585 (H0S59_08585) - 1840172..1841152 (+) 981 WP_004887483.1 DNA polymerase III subunit delta' -
  H0S59_RS08590 (H0S59_08590) - 1841165..1841506 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  H0S59_RS08595 (H0S59_08595) - 1841524..1842297 (+) 774 WP_004887481.1 TatD family hydrolase -
  H0S59_RS08600 (H0S59_08600) - 1842335..1842943 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  H0S59_RS08605 (H0S59_08605) - 1842953..1843504 (+) 552 WP_002049902.1 type II secretion system protein -
  H0S59_RS08610 (H0S59_08610) xcpV 1843494..1843874 (+) 381 WP_004887479.1 type II secretion system minor pseudopilin GspI Machinery gene
  H0S59_RS08615 (H0S59_08615) xcpW 1843874..1844689 (+) 816 WP_033846335.1 type II secretion system minor pseudopilin GspJ Machinery gene
  H0S59_RS08620 (H0S59_08620) gspK 1844689..1845648 (+) 960 WP_004887476.1 type II secretion system minor pseudopilin GspK -
  H0S59_RS08625 (H0S59_08625) - 1845878..1846474 (+) 597 WP_004887474.1 6-carboxytetrahydropterin synthase -
  H0S59_RS08630 (H0S59_08630) ung 1846525..1847238 (+) 714 WP_002049829.1 uracil-DNA glycosylase -
  H0S59_RS08635 (H0S59_08635) - 1847235..1848359 (+) 1125 WP_006580787.1 enoyl-CoA hydratase/isomerase family protein -
  H0S59_RS08640 (H0S59_08640) tadA 1848366..1848869 (+) 504 WP_006580788.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14024.27 Da        Isoelectric Point: 9.7155

>NTDB_id=467007 H0S59_RS08610 WP_004887479.1 1843494..1843874(+) (xcpV) [Acinetobacter nosocomialis strain WM98B]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQTKQVTSQGETWQI
YKSAESTVSPNVQKIDVQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=467007 H0S59_RS08610 WP_004887479.1 1843494..1843874(+) (xcpV) [Acinetobacter nosocomialis strain WM98B]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTAGCAGCTGTTGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCTACTTCTAATGCCATTTTAAGAACTAAAGCTCAATTTGTAGCTATGAATGAAATTG
CTATGATGGAGATTAATCAAGAGTGGCTGCAGGGCACTCAAACTAAGCAAGTAACTTCTCAAGGAGAGACTTGGCAGATT
TATAAATCAGCTGAATCAACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAGTTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

95.238

100

0.952