Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   H0S59_RS01365 Genome accession   NZ_CP059078
Coordinates   290468..292036 (-) Length   522 a.a.
NCBI ID   WP_033846928.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain WM98B     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 285468..297036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S59_RS01350 (H0S59_01350) gpmI 286272..287819 (+) 1548 WP_022575138.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  H0S59_RS01355 (H0S59_01355) - 287835..289019 (+) 1185 WP_004883636.1 S41 family peptidase -
  H0S59_RS01360 (H0S59_01360) pilR 289023..290444 (-) 1422 WP_033846927.1 sigma-54 dependent transcriptional regulator Regulator
  H0S59_RS01365 (H0S59_01365) pilS 290468..292036 (-) 1569 WP_033846928.1 PAS domain-containing sensor histidine kinase Regulator
  H0S59_RS01370 (H0S59_01370) - 292047..292682 (-) 636 WP_000633799.1 response regulator -
  H0S59_RS01375 (H0S59_01375) pbpG 292894..293940 (+) 1047 WP_004710943.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  H0S59_RS01380 (H0S59_01380) thrC 294049..295188 (-) 1140 WP_002048893.1 threonine synthase -
  H0S59_RS01385 (H0S59_01385) - 295244..296545 (-) 1302 WP_002048970.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59157.63 Da        Isoelectric Point: 6.8577

>NTDB_id=466990 H0S59_RS01365 WP_033846928.1 290468..292036(-) (pilS) [Acinetobacter nosocomialis strain WM98B]
MHSPLNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTNAQTDNSLQQPSLYFYTLLSYSIVSLVQLLCFKFIAIQTTRQ
LILFFIVDIICLSLLSFSAGEPNLQISLLYVIAIFTSAILLSARVSLVITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEQGYLVLDENYDIVVSNPAACSLLGIPPQFANE
KYPLAKWHADLFEILKFGDLKENDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDLEQQNTLRHMIGKQTKRIDSIVQDTLGLARSERTHPIQIDLNNFINTLLDEDLSDVK
HSIQLKISDRSLKFLFDEKQLRQVMINLVRNALRHNAPDSPNVMINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIF

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=466990 H0S59_RS01365 WP_033846928.1 290468..292036(-) (pilS) [Acinetobacter nosocomialis strain WM98B]
ATGCACTCTCCTTTAAATTCATCCCTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGTTTATACCGTCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCAATGCTCAAACCGACAATAGTTTGCAGCAACCCTCTTTATATTTTT
ACACTTTACTAAGCTATTCAATTGTAAGTCTTGTGCAATTGTTATGCTTTAAATTTATTGCTATCCAAACTACTCGGCAG
CTTATTTTATTTTTTATTGTCGACATTATTTGTTTAAGCCTCCTTTCATTTTCTGCTGGGGAGCCTAATTTACAAATTAG
TTTGCTGTATGTGATTGCAATCTTTACTTCGGCGATTTTGCTCAGTGCAAGAGTGTCTTTAGTTATTACCTTACTTGCGG
TTATTGCGGTTATTTATCAACGCTTCGTGGGTAGTTTATTTGACTACAACAATCTAAACACAATCGGTAATAGCGCTTTA
TTAGCTTTTTTATTTTTCGTTGTTCACGGGATTGGACAAATTGCAGTGCAGCGCTTTAAATTACTTGAGGCACTCACCTT
TCACCAGTCAATCGAGCTTTACCAGCTTCAAAATATTAACCGTTATATTTTAGAGCAAATTGAACAAGGCTATTTAGTTT
TAGACGAAAATTACGACATTGTTGTTAGCAATCCCGCTGCTTGTTCATTGCTTGGTATTCCTCCCCAGTTTGCCAATGAA
AAATATCCTTTAGCAAAGTGGCATGCCGATTTATTTGAAATATTGAAGTTTGGCGACTTAAAAGAAAATGACCGATTTAT
TTTTGAGTCTCGGCTATCGGCTTATTCCATTAATATTAAAGTACAGCATCTTTTAGTGCCGCAACAAGCTCTGACACTAC
TCATTTTACAAGATGCCCAACAAATTAATCAGCAAGCACAGCAACTTAAACTTGCCGCTTTAGGGCAACTCTCGGCAAGT
ATTGCACATGAAATCCGCAATCCTCTGGCTGCAATTGTTCAAGCAAATGAGTTACTTAAAGATAGTGATCTCGAACAACA
AAATACTTTACGCCATATGATTGGCAAACAAACTAAACGCATTGATAGTATTGTTCAGGACACCTTAGGACTTGCTCGTA
GCGAAAGAACACACCCTATTCAGATTGACTTAAACAATTTTATAAATACGCTACTCGATGAAGATTTATCTGACGTTAAG
CACTCAATTCAACTCAAAATTTCTGATCGTTCTTTAAAATTTTTATTTGACGAAAAACAACTAAGACAAGTCATGATCAA
TTTAGTGCGAAATGCTTTACGACATAATGCACCCGACTCACCGAATGTCATGATCAACATTCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATACTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACCTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATTTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.061

100

0.941