Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SLUG_RS11465 Genome accession   NC_017353
Coordinates   2409405..2410772 (-) Length   455 a.a.
NCBI ID   WP_014533364.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis N920143     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2404405..2415772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLUG_RS11450 (SLUG_22780) cysE 2405518..2406165 (-) 648 WP_172412359.1 serine O-acetyltransferase -
  SLUG_RS11455 (SLUG_22790) gltX 2406522..2407979 (-) 1458 WP_002459951.1 glutamate--tRNA ligase -
  SLUG_RS11460 (SLUG_22800) - 2408303..2409370 (-) 1068 WP_002459952.1 PIN/TRAM domain-containing protein -
  SLUG_RS11465 (SLUG_22810) radA 2409405..2410772 (-) 1368 WP_014533364.1 DNA repair protein RadA Machinery gene
  SLUG_RS11470 (SLUG_22820) - 2411003..2413462 (-) 2460 WP_002459954.1 ATP-dependent Clp protease ATP-binding subunit -
  SLUG_RS11475 (SLUG_22830) - 2413476..2414489 (-) 1014 WP_012991027.1 protein arginine kinase -
  SLUG_RS11480 (SLUG_22840) - 2414482..2415039 (-) 558 WP_002459956.1 UvrB/UvrC motif-containing protein -
  SLUG_RS11485 (SLUG_22850) - 2415066..2415527 (-) 462 WP_002459957.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50027.49 Da        Isoelectric Point: 7.2484

>NTDB_id=46698 SLUG_RS11465 WP_014533364.1 2409405..2410772(-) (radA) [Staphylococcus lugdunensis N920143]
MAKKKIIFECMACGYQSPKWMGKCPNCGAWNQMEEIIEQKAAHPKHGVKAQTATGKVQKLNSIQHESTPRVQTKSQEFNR
VLGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQQLNVLYITGEESLNQTKLRAERLEEDSSQLNVLAETDLEVIHQTV
SETKPDILVVDSIQTIYHPEIASAPGSVSQVRESTQSLMNIAKQMDIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVKNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENYLLQKQDAYIKVAGGVRLTEPAVDLSVIVATASSFKDEAVDGLDCYIGEVGLTGEV
RRVSRIEQRVQEAAKLGFKRVILPKTNIGGWTFPDNIQVIGVSTVHEALKYAFKA

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=46698 SLUG_RS11465 WP_014533364.1 2409405..2410772(-) (radA) [Staphylococcus lugdunensis N920143]
GTGGCCAAGAAGAAAATCATTTTTGAGTGTATGGCATGTGGCTATCAATCTCCTAAATGGATGGGTAAATGTCCTAATTG
TGGTGCTTGGAACCAAATGGAAGAGATTATAGAACAGAAGGCTGCACATCCTAAACATGGGGTTAAAGCACAAACGGCTA
CCGGAAAAGTTCAAAAATTAAACAGTATTCAACATGAATCGACACCACGTGTGCAAACGAAATCTCAAGAGTTTAATCGT
GTGTTAGGTGGGGGGATTGTTAGTGGTTCTTTAGTGTTGATTGGTGGAGATCCAGGTATCGGGAAATCAACACTATTACT
ACAAATCTGTGCCTCGCTTTCGCAACAATTAAACGTGCTGTATATTACAGGTGAGGAATCATTAAATCAAACAAAATTGA
GAGCAGAACGCTTAGAGGAAGACTCTAGTCAATTAAATGTGTTAGCTGAGACAGATTTAGAAGTTATTCACCAAACCGTT
TCAGAAACTAAGCCAGATATTTTAGTGGTGGACTCTATTCAGACGATTTACCATCCTGAGATTGCATCGGCACCCGGATC
TGTTTCTCAAGTGCGTGAGAGTACTCAAAGTTTGATGAATATTGCGAAGCAGATGGATATTGCCACATTTATTGTAGGAC
ATGTGACTAAAGAGGGGCAGATAGCTGGTCCACGATTGTTAGAACACATGGTAGATACAGTGCTTTATTTTGAAGGTGAT
GAACATCATGCGTATCGTATTTTACGTGCTGTTAAAAACCGTTTTGGTTCAACAAATGAAATGGGTATTTTCGAAATGAA
GCAAAGTGGTTTGAAAGGTGTCAAAAACCCGTCCGAAATGTTTTTAGAAGAACGTTCAACAAATGTTCCGGGTTCAACAA
TTGTGTCGACAATGGAAGGAACACGACCATTACTTATTGAAGTACAAGCTTTAGTGACCCCAACAACGTTTAATAATCCA
CGACGTATGGCAACAGGTATTGACCATAACCGTCTGAGCCTGCTTATGGCAGTGCTTGAAAAGAAAGAAAATTATTTATT
GCAGAAACAAGATGCATATATTAAAGTGGCAGGTGGTGTAAGATTAACAGAACCGGCTGTAGACTTAAGTGTAATTGTAG
CAACTGCATCAAGCTTTAAAGATGAAGCGGTTGATGGTTTAGATTGTTATATTGGAGAAGTAGGTTTGACTGGTGAAGTC
AGACGTGTGTCACGTATTGAACAACGCGTTCAAGAAGCAGCTAAACTAGGATTTAAACGTGTGATACTCCCTAAAACAAA
TATCGGCGGATGGACATTTCCTGACAATATACAAGTCATAGGTGTTTCGACAGTACATGAGGCATTGAAATATGCTTTCA
AAGCTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)

AAA domain (AAA_25)

(68-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.502

100

0.659
  radA Streptococcus pneumoniae Rx1

59.603

99.56

0.593
  radA Streptococcus pneumoniae D39

59.603

99.56

0.593
  radA Streptococcus pneumoniae R6

59.603

99.56

0.593
  radA Streptococcus pneumoniae TIGR4

59.603

99.56

0.593
  radA Streptococcus mitis NCTC 12261

59.603

99.56

0.593
  radA Streptococcus mitis SK321

59.603

99.56

0.593

Multiple sequence alignment