Detailed information NTG0466916

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6J85_RS07095
• Genome accession: NZ_CP069447
• Coordinates: 1495080..1496072 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1255
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1490080..1501072

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J85_RS07065 (I6J85_07065)	ispD	1490141..1490851 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I6J85_RS07070 (I6J85_07070)	ispF	1490851..1491330 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6J85_RS07075 (I6J85_07075)	truD	1491327..1492376 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
I6J85_RS07080 (I6J85_07080)	surE	1492357..1493118 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6J85_RS07085 (I6J85_07085)	pcm	1493112..1493738 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
I6J85_RS07090 (I6J85_07090)	nlpD	1493923..1495017 (+)	1095	WP_306163061.1	murein hydrolase activator NlpD	-
I6J85_RS07095 (I6J85_07095)	rpoS	1495080..1496072 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6J85_RS07100 (I6J85_07100)	-	1496250..1496801 (-)	552	WP_001179443.1	flavodoxin family protein	-
I6J85_RS07105 (I6J85_07105)	-	1497026..1498069 (+)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
I6J85_RS07110 (I6J85_07110)	ygbN	1498212..1499576 (-)	1365	WP_000104433.1	GntP family transporter	-
I6J85_RS07115 (I6J85_07115)	ygbM	1499665..1500441 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=466916 I6J85_RS07095 WP_000081550.1 1495080..1496072(+) (rpoS) [Escherichia coli strain FDAARGOS_1255]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=466916 I6J85_RS07095 WP_000081550.1 1495080..1496072(+) (rpoS) [Escherichia coli strain FDAARGOS_1255]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGTGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715