Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   H0H12_RS07200 Genome accession   NZ_CP059052
Coordinates   1610955..1611590 (+) Length   211 a.a.
NCBI ID   WP_003247132.1    Uniprot ID   A0AAD2WBR1
Organism   Pseudomonas putida strain BS3701     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1605955..1616590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0H12_RS07180 (H0H12_07180) - 1606216..1607148 (+) 933 WP_003247127.1 ABC transporter ATP-binding protein -
  H0H12_RS07185 (H0H12_07185) - 1607145..1607924 (+) 780 WP_003247128.1 ABC transporter permease -
  H0H12_RS07190 (H0H12_07190) - 1607934..1608440 (-) 507 Protein_1428 DUF2062 domain-containing protein -
  H0H12_RS07195 (H0H12_07195) comA 1608583..1610799 (+) 2217 WP_180689464.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  H0H12_RS07200 (H0H12_07200) exbB 1610955..1611590 (+) 636 WP_003247132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  H0H12_RS07205 (H0H12_07205) - 1611587..1612021 (+) 435 WP_014859651.1 biopolymer transporter ExbD -
  H0H12_RS07210 (H0H12_07210) lpxK 1612021..1613022 (+) 1002 WP_180689465.1 tetraacyldisaccharide 4'-kinase -
  H0H12_RS07215 (H0H12_07215) - 1613067..1613252 (+) 186 WP_003247142.1 Trm112 family protein -
  H0H12_RS07220 (H0H12_07220) kdsB 1613249..1614013 (+) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H0H12_RS07225 (H0H12_07225) - 1614013..1614477 (+) 465 WP_004575950.1 low molecular weight protein-tyrosine-phosphatase -
  H0H12_RS07230 (H0H12_07230) murB 1614474..1615493 (+) 1020 WP_047604515.1 UDP-N-acetylmuramate dehydrogenase -
  H0H12_RS07235 (H0H12_07235) - 1615855..1616214 (-) 360 WP_080580377.1 ASCH domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.20 Da        Isoelectric Point: 7.3616

>NTDB_id=466853 H0H12_RS07200 WP_003247132.1 1610955..1611590(+) (exbB) [Pseudomonas putida strain BS3701]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=466853 H0H12_RS07200 WP_003247132.1 1610955..1611590(+) (exbB) [Pseudomonas putida strain BS3701]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGTGCCAGCCGCGTCACCCCGCCCCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCGCTGCGGGCCGATTCGCCACTGGGCGAAATCCTGGCAGCGGGCCTCGCCAAC
TCGCGCCATGGTCGTGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCGCCTCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCAGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825