Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H0H12_RS04005 Genome accession   NZ_CP059052
Coordinates   909867..911237 (+) Length   456 a.a.
NCBI ID   WP_003251626.1    Uniprot ID   I7AVL1
Organism   Pseudomonas putida strain BS3701     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 904867..916237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0H12_RS03980 (H0H12_03980) - 905814..905969 (+) 156 WP_003251614.1 DUF2474 domain-containing protein -
  H0H12_RS03985 (H0H12_03985) - 906075..907199 (-) 1125 WP_010955306.1 methyltransferase -
  H0H12_RS03990 (H0H12_03990) - 907296..908003 (-) 708 WP_180689256.1 autoinducer binding domain-containing protein -
  H0H12_RS03995 (H0H12_03995) - 908219..908995 (+) 777 WP_003251619.1 ferredoxin--NADP reductase -
  H0H12_RS04000 (H0H12_04000) mscL 909271..909690 (-) 420 WP_014592354.1 large-conductance mechanosensitive channel protein MscL -
  H0H12_RS04005 (H0H12_04005) radA 909867..911237 (+) 1371 WP_003251626.1 DNA repair protein RadA Machinery gene
  H0H12_RS04010 (H0H12_04010) - 911273..912790 (-) 1518 WP_180689257.1 nucleobase:cation symporter-2 family protein -
  H0H12_RS04015 (H0H12_04015) - 913054..913416 (-) 363 WP_180689258.1 PilZ domain-containing protein -
  H0H12_RS04020 (H0H12_04020) - 913593..915659 (+) 2067 WP_004577217.1 carbon starvation CstA family protein -
  H0H12_RS04025 (H0H12_04025) - 915677..915874 (+) 198 WP_003251633.1 YbdD/YjiX family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48741.18 Da        Isoelectric Point: 6.8985

>NTDB_id=466848 H0H12_RS04005 WP_003251626.1 909867..911237(+) (radA) [Pseudomonas putida strain BS3701]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTE
LDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETII
ATARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHL
ANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLS
GEVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=466848 H0H12_RS04005 WP_003251626.1 909867..911237(+) (radA) [Pseudomonas putida strain BS3701]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAATGCGGCGCGACCTTCCCCAAATGGGCCGGCCAGTGCGGCGAATG
CGGGGCCTGGAACACCCTGGTCGAAACCATGATCGAAAGCGGCGGCGCTGCTGCACCCAGTAGCGGCCGCGCTGGCTGGA
CAGGACAGCAAGCGCAGATCAAGACCCTGGCCGAAGTCAGTGTCGAGGAAATCCCGCGTTTCACGACCAGCAGCACCGAA
CTGGACCGCGTGCTGGGTGGCGGCTTGGTGGATGGCTCGGTGGTGCTGATTGGCGGTGACCCCGGCATCGGCAAGTCGAC
CATTTTGCTACAGACCTTGTGCAACATCGCCGTGGGCATGCCGGCACTGTATGTCACGGGGGAGGAGTCGCAGCAGCAGG
TGGCCATGCGCTCGCGGCGGCTGGGCCTACCCCAGGACCAGCTCAAGGTGATGACCGAAACCTGCATCGAGACGATCATT
GCCACAGCGCGGGTCGAGAAGCCGCGGGTAATGGTGATCGACTCGATCCAGACCATTTTCACCGAGCAGTTGCAATCGGC
CCCGGGCGGCGTGGCCCAGGTGCGCGAAAGCACAGCGTTGCTGGTGCGCTATGCCAAGCAAAGCGGTACGGCAATCTTTC
TGGTCGGCCACGTGACCAAGGAAGGCTCGCTGGCTGGCCCAAGGGTGCTGGAGCACATGGTCGACACGGTGCTGTATTTC
GAAGGTGAGTCCGATGGCCGGCTGCGCTTGCTGCGGGCGGTCAAGAACCGCTTTGGCGCGGTCAACGAGCTGGGCGTGTT
CGGCATGACCGATCGTGGTCTCAAGGAGGTATCCAACCCGTCGGCGATCTTCCTCAACCGTACTCAGGAAGAGGTGCCGG
GTAGCGTGGTGATGGCAACCTGGGAGGGTACCCGGCCAATGCTGGTCGAGGTGCAGGCGCTGGTCGACGATAGCCATCTG
GCCAACCCGCGGCGGGTAACCTTGGGCCTGGACCAGAACCGCCTGGCCATGTTGTTGGCGGTGCTCCACCGCCATGGCGG
TATCCCGACCCATGACCAGGATGTGTTTCTCAACGTGGTCGGCGGAGTGAAGGTGCTGGAAACGGCTTCGGACCTGGCGC
TGCTGGCGGCGGTGATGTCCAGCTTGCGTAACCGGCCACTGGCCCACGGTTTGCTGGTGTTTGGCGAGATTGGCTTGTCG
GGCGAGGTACGGCCGGTGCCCAGTGGTCAGGAGCGCTTGAAGGAAGCGGCCAAGCACGGCTTCAAGCGTGCCATCGTACC
CAAGGGCAATGCGCCGAAAGAAGCGCCTGCGGGTTTGCAGGTGATTGCCGTTACCCGCCTGGAACAGGCGCTGGATGCAT
TGTTCGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(355-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I7AVL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.487
  radA Streptococcus pneumoniae Rx1

46.087

100

0.465
  radA Streptococcus pneumoniae D39

46.087

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.465
  radA Streptococcus pneumoniae R6

46.087

100

0.465
  radA Streptococcus mitis NCTC 12261

45.87

100

0.463
  radA Streptococcus mitis SK321

46.053

100

0.461