Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   H0H12_RS02040 Genome accession   NZ_CP059052
Coordinates   456230..456631 (+) Length   133 a.a.
NCBI ID   WP_010955560.1    Uniprot ID   -
Organism   Pseudomonas putida strain BS3701     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 451230..461631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0H12_RS02010 (H0H12_02010) - 451297..452301 (-) 1005 WP_003249311.1 aspartate carbamoyltransferase catalytic subunit -
  H0H12_RS02015 (H0H12_02015) pyrR 452314..452832 (-) 519 WP_180689151.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  H0H12_RS02020 (H0H12_02020) ruvX 452882..453307 (-) 426 WP_003249316.1 Holliday junction resolvase RuvX -
  H0H12_RS02025 (H0H12_02025) - 453307..453876 (-) 570 WP_003249318.1 YqgE/AlgH family protein -
  H0H12_RS02030 (H0H12_02030) - 454041..454946 (-) 906 WP_014592660.1 energy transducer TonB -
  H0H12_RS02035 (H0H12_02035) gshB 455038..455991 (-) 954 WP_121784159.1 glutathione synthase -
  H0H12_RS02040 (H0H12_02040) pilG 456230..456631 (+) 402 WP_010955560.1 PleD family two-component system response regulator Regulator
  H0H12_RS02045 (H0H12_02045) pilH 456679..457044 (+) 366 WP_014592657.1 twitching motility response regulator PilH -
  H0H12_RS02050 (H0H12_02050) - 457041..457595 (+) 555 WP_003249330.1 chemotaxis protein CheW -
  H0H12_RS02055 (H0H12_02055) - 457643..459667 (+) 2025 WP_223817433.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14602.85 Da        Isoelectric Point: 6.4772

>NTDB_id=466847 H0H12_RS02040 WP_010955560.1 456230..456631(+) (pilG) [Pseudomonas putida strain BS3701]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSAFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFAAPQQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=466847 H0H12_RS02040 WP_010955560.1 456230..456631(+) (pilG) [Pseudomonas putida strain BS3701]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGC
GGGCTGCGAGGTAATCACCGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCATCAGCCCAGTATCATTTTCG
TCGATGTGCTGATGCCACGCCTGGACGGCTACCAGACCTGCGCGGTAATCAAGCACAACAGTGCCTTCAAGGACACCCCG
GTTATCCTGCTGTCGTCCCGCGATGGCCTGTTCGACAAGGCCCGCGGCCGGGTGGTCGGTTCCGATCAGTTCCTGACCAA
ACCGTTCAGCAAGGAAGAACTGCTCGACGCGATCCGCGCCCATGTGCCCGGGTTTGCCGCACCTCAACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632