Detailed information NTG0466820

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6J81_RS10480
• Genome accession: NZ_CP069445
• Coordinates: 2187215..2188207 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1251
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2182215..2193207

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J81_RS10460 (I6J81_10460)	ygbM	2182853..2183629 (+)	777	WP_001136915.1	HPr family phosphocarrier protein	-
I6J81_RS10465 (I6J81_10465)	ygbN	2183718..2185082 (+)	1365	WP_000104433.1	GntP family transporter	-
I6J81_RS10470 (I6J81_10470)	-	2185225..2186268 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
I6J81_RS10475 (I6J81_10475)	-	2186493..2187044 (+)	552	WP_001179443.1	flavodoxin family protein	-
I6J81_RS10480 (I6J81_10480)	rpoS	2187215..2188207 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6J81_RS10485 (I6J81_10485)	nlpD	2188270..2189364 (-)	1095	WP_306217602.1	murein hydrolase activator NlpD	-
I6J81_RS10490 (I6J81_10490)	pcm	2189549..2190175 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
I6J81_RS10495 (I6J81_10495)	surE	2190169..2190930 (-)	762	WP_001350156.1	5'/3'-nucleotidase SurE	-
I6J81_RS10500 (I6J81_10500)	truD	2190911..2191960 (-)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
I6J81_RS10505 (I6J81_10505)	ispF	2191957..2192436 (-)	480	WP_001219238.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6J81_RS10510 (I6J81_10510)	ispD	2192436..2193146 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=466820 I6J81_RS10480 WP_000081550.1 2187215..2188207(-) (rpoS) [Escherichia coli strain FDAARGOS_1251]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=466820 I6J81_RS10480 WP_000081550.1 2187215..2188207(-) (rpoS) [Escherichia coli strain FDAARGOS_1251]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715