Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   SLUG_RS01645 Genome accession   NC_017353
Coordinates   358914..359579 (+) Length   221 a.a.
NCBI ID   WP_002460617.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis N920143     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 353914..364579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLUG_RS01625 (SLUG_03340) - 354288..355559 (+) 1272 WP_002478509.1 nucleotide sugar dehydrogenase -
  SLUG_RS01630 (SLUG_03350) wecB 355602..356741 (+) 1140 WP_002478510.1 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase -
  SLUG_RS01635 (SLUG_03360) - 356927..358375 (-) 1449 WP_002478511.1 alkaline phosphatase -
  SLUG_RS13105 - 358594..358698 (+) 105 Protein_332 hypothetical protein -
  SLUG_RS01645 (SLUG_03380) braR 358914..359579 (+) 666 WP_002460617.1 response regulator transcription factor Regulator
  SLUG_RS01650 (SLUG_03390) braS 359585..360493 (+) 909 WP_002478513.1 sensor histidine kinase Regulator
  SLUG_RS01655 (SLUG_03400) - 360599..361348 (+) 750 WP_002478514.1 ABC transporter ATP-binding protein -
  SLUG_RS01660 (SLUG_03410) - 361332..363332 (+) 2001 WP_012990692.1 FtsX-like permease family protein -
  SLUG_RS01665 (SLUG_03420) - 363374..363823 (+) 450 WP_002478516.1 DUF4064 domain-containing protein -
  SLUG_RS01670 (SLUG_03430) - 363910..364389 (+) 480 WP_002478517.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25798.73 Da        Isoelectric Point: 4.6843

>NTDB_id=46670 SLUG_RS01645 WP_002460617.1 358914..359579(+) (braR) [Staphylococcus lugdunensis N920143]
MRIMIVEDDVVIRESLAGELMKWNYDVVAVDTFDDIVSWFVKYEPDLVLLDINLPTLNGFHWCQEIRKSSNVPIIFISSR
TDNMDQIMAIQMGGDDFIEKPFNLSLTITKIQALLRRTYDLTVNHNETTVRDCKLIIDEATLYYKEESVHLSFTELQIIK
MLFDNQGKYVSRTALIEKCWESEHFIDDNTLAVNMTRLRKKLNSIGLEDFIETKKNIGYKV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=46670 SLUG_RS01645 WP_002460617.1 358914..359579(+) (braR) [Staphylococcus lugdunensis N920143]
ATGAGGATTATGATTGTTGAGGATGATGTTGTGATTCGCGAGAGTTTGGCTGGTGAACTGATGAAGTGGAATTATGATGT
GGTTGCTGTAGATACCTTTGATGATATTGTGTCTTGGTTCGTAAAGTATGAACCAGATTTAGTGTTGTTGGACATTAATT
TACCTACATTGAATGGATTTCACTGGTGCCAAGAAATTCGCAAATCGTCAAATGTACCAATTATTTTTATTAGCTCACGC
ACGGATAATATGGATCAGATTATGGCGATACAAATGGGTGGAGATGACTTTATAGAAAAACCATTTAATCTGTCATTGAC
CATAACAAAGATTCAAGCTTTGCTTCGTCGAACTTATGATTTAACTGTGAATCATAATGAAACGACAGTTCGTGACTGTA
AGTTGATTATTGATGAAGCAACGCTTTATTACAAAGAAGAATCGGTACATTTATCATTTACAGAGTTACAAATTATTAAA
ATGCTGTTTGATAATCAAGGTAAATATGTCAGTCGCACAGCGTTAATTGAAAAATGCTGGGAGTCTGAACACTTTATTGA
TGACAATACGCTTGCGGTAAATATGACACGCTTACGCAAAAAACTTAATTCTATAGGGCTTGAAGATTTTATTGAAACAA
AAAAGAATATAGGATATAAGGTTTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)

Response regulator receiver domain (Response_reg)

(3-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

76.923

100

0.769

Multiple sequence alignment