Detailed information NTG0466637

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6J90_RS08335
• Genome accession: NZ_CP069438
• Coordinates: 1679135..1680127 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1260
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1674135..1685127

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J90_RS08315 (I6J90_08315)	ygbM	1674766..1675542 (+)	777	WP_001136928.1	HPr family phosphocarrier protein	-
I6J90_RS08320 (I6J90_08320)	ygbN	1675631..1676995 (+)	1365	WP_000104433.1	GntP family transporter	-
I6J90_RS08325 (I6J90_08325)	-	1677138..1678181 (-)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
I6J90_RS08330 (I6J90_08330)	-	1678406..1678957 (+)	552	WP_001179442.1	flavodoxin family protein	-
I6J90_RS08335 (I6J90_08335)	rpoS	1679135..1680127 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6J90_RS08340 (I6J90_08340)	nlpD	1680190..1681284 (-)	1095	WP_306217602.1	murein hydrolase activator NlpD	-
I6J90_RS08345 (I6J90_08345)	pcm	1681469..1682095 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
I6J90_RS08350 (I6J90_08350)	surE	1682089..1682850 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6J90_RS08355 (I6J90_08355)	truD	1682831..1683880 (-)	1050	WP_000568959.1	tRNA pseudouridine(13) synthase TruD	-
I6J90_RS08360 (I6J90_08360)	ispF	1683877..1684356 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6J90_RS08365 (I6J90_08365)	ispD	1684356..1685066 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=466637 I6J90_RS08335 WP_000081550.1 1679135..1680127(-) (rpoS) [Escherichia coli strain FDAARGOS_1260]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=466637 I6J90_RS08335 WP_000081550.1 1679135..1680127(-) (rpoS) [Escherichia coli strain FDAARGOS_1260]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGCCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGATCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715