Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6J90_RS05060 Genome accession   NZ_CP069438
Coordinates   963029..964456 (+) Length   475 a.a.
NCBI ID   WP_000980557.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1260     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 958029..969456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J90_RS05030 (I6J90_05030) pduU 958407..958757 (+) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -
  I6J90_RS05035 (I6J90_05035) - 958762..959205 (+) 444 WP_021513692.1 EutP/PduV family microcompartment system protein -
  I6J90_RS05040 (I6J90_05040) tmaR 959306..959635 (-) 330 WP_000450409.1 DUF496 family protein -
  I6J90_RS05045 (I6J90_05045) yeeA 959806..960864 (-) 1059 WP_001200890.1 FUSC family protein -
  I6J90_RS05050 (I6J90_05050) sbmC 961062..961535 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  I6J90_RS05055 (I6J90_05055) dacD 961654..962820 (-) 1167 WP_045233214.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I6J90_RS05060 (I6J90_05060) sbcB 963029..964456 (+) 1428 WP_000980557.1 exodeoxyribonuclease I Machinery gene
  I6J90_RS05065 (I6J90_05065) plaP 964530..965888 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  I6J90_RS05070 (I6J90_05070) yoeI 965878..965940 (-) 63 WP_010723108.1 membrane protein YoeI -
  I6J90_RS05075 (I6J90_05075) yeeY 966155..967084 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  I6J90_RS05080 (I6J90_05080) yeeZ 967130..967954 (-) 825 WP_000754740.1 SDR family oxidoreductase -
  I6J90_RS05085 (I6J90_05085) yoeB 968037..968291 (-) 255 WP_000767828.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  I6J90_RS05090 (I6J90_05090) yefM 968288..968539 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  I6J90_RS05095 (I6J90_05095) hisL 968822..968872 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54455.73 Da        Isoelectric Point: 5.4700

>NTDB_id=466624 I6J90_RS05060 WP_000980557.1 963029..964456(+) (sbcB) [Escherichia coli strain FDAARGOS_1260]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=466624 I6J90_RS05060 WP_000980557.1 963029..964456(+) (sbcB) [Escherichia coli strain FDAARGOS_1260]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583