Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   I6J32_RS04500 Genome accession   NZ_CP069437
Coordinates   890896..892293 (-) Length   465 a.a.
NCBI ID   WP_204156317.1    Uniprot ID   -
Organism   Moraxella osloensis strain FDAARGOS_1202     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 885896..897293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J32_RS04475 (I6J32_04480) - 886307..886828 (-) 522 WP_204156757.1 hypothetical protein -
  I6J32_RS04480 (I6J32_04485) - 887361..888353 (+) 993 WP_416234241.1 ABC transporter substrate-binding protein -
  I6J32_RS04485 (I6J32_04490) - 888534..889439 (+) 906 WP_204156315.1 ABC transporter permease -
  I6J32_RS04490 (I6J32_04495) - 889512..890306 (+) 795 WP_036593505.1 ABC transporter ATP-binding protein -
  I6J32_RS04495 (I6J32_04500) - 890505..890837 (+) 333 WP_204156316.1 hypothetical protein -
  I6J32_RS04500 (I6J32_04505) radA/sms 890896..892293 (-) 1398 WP_204156317.1 DNA repair protein RadA Machinery gene
  I6J32_RS04505 (I6J32_04510) - 892447..892881 (-) 435 WP_204156318.1 PACE efflux transporter -
  I6J32_RS04510 (I6J32_04515) lptB 892920..893663 (-) 744 WP_135889063.1 LPS export ABC transporter ATP-binding protein -
  I6J32_RS04515 (I6J32_04520) lptA 893721..894230 (-) 510 WP_135889091.1 lipopolysaccharide transport periplasmic protein LptA -
  I6J32_RS04520 (I6J32_04525) lptC 894408..894980 (-) 573 WP_204156319.1 LPS export ABC transporter periplasmic protein LptC -
  I6J32_RS04525 (I6J32_04530) - 895116..895640 (-) 525 WP_204156320.1 KdsC family phosphatase -
  I6J32_RS04530 (I6J32_04535) - 895698..896666 (-) 969 WP_204156321.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 49566.99 Da        Isoelectric Point: 7.2122

>NTDB_id=466574 I6J32_RS04500 WP_204156317.1 890896..892293(-) (radA/sms) [Moraxella osloensis strain FDAARGOS_1202]
MAKSKSSYVCQQCGANFGKWSGQCAECGAWNSLVEAPTVSMPHHKPVTKKASNYAGEQSSVMPLNAVPMSLDTRLSTGVG
EFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAIHMAENHSLAGSALYITGEESLSQVAMRASRLGLPNNNLKVLAETN
VEMICQALTQEQPAVAVIDSIQTLFTEAIQSAPGGVSQIRESAAILTRYAKQTGTALFLVGHVTKEGALAGPRVLEHMVD
AVLYFEGQSDSRFRMIRAVKNRFGAVNELGIFAMTDAGLKEVANPSAIFLSRYDKPIAGSVVMVSREGTRPLLVEVQALV
DESQGQPRRMALGLDYQRLAMLLAVMHRHGGIQTNGQDVYVNVVGGVKVLETGSDLAVLLACASSIKEKPLPYTLAVFGE
VGLSGEIRPVPNGQERLKEAVKHGFTHAIVPKANAPKTQLEQYQGLKIIAVERLDDAIDSAFNYL

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=466574 I6J32_RS04500 WP_204156317.1 890896..892293(-) (radA/sms) [Moraxella osloensis strain FDAARGOS_1202]
ATGGCAAAATCAAAATCATCCTACGTGTGCCAACAGTGTGGCGCAAACTTCGGTAAATGGTCGGGACAGTGTGCCGAATG
TGGCGCATGGAATAGCCTTGTCGAAGCCCCGACGGTCAGCATGCCACATCATAAACCTGTCACCAAAAAAGCCAGCAACT
ACGCGGGCGAACAATCGAGCGTCATGCCACTTAATGCTGTGCCTATGTCGCTCGATACCAGGCTGTCAACGGGTGTTGGT
GAGTTTGATCGGGTGTTAGGCGGCGGCTTAGTAGCAGGTTCTGTGGTGCTGATTGGGGGTGATCCGGGTATTGGCAAATC
CACTATCTTGCTACAGACGGCGATTCACATGGCAGAAAATCACAGTCTAGCCGGTAGTGCGCTGTACATTACGGGTGAAG
AATCGTTGTCACAGGTGGCGATGCGCGCTAGTCGTTTGGGGCTACCCAATAACAACTTAAAAGTATTGGCAGAAACCAAT
GTTGAAATGATTTGCCAAGCCTTAACCCAAGAGCAACCAGCCGTCGCCGTCATTGACTCCATTCAGACTTTGTTTACCGA
AGCCATCCAATCCGCGCCAGGCGGTGTCAGTCAAATCCGTGAGTCAGCGGCGATTCTGACGCGTTATGCCAAGCAAACGG
GCACAGCGTTATTCTTGGTCGGGCATGTGACCAAAGAAGGGGCGCTGGCAGGCCCTCGCGTGCTAGAACATATGGTGGAT
GCGGTACTGTATTTTGAAGGACAGTCGGACAGCCGTTTTCGAATGATTCGTGCGGTGAAAAATCGTTTTGGTGCCGTCAA
CGAGCTGGGGATTTTTGCCATGACGGATGCAGGGCTCAAAGAAGTGGCAAATCCATCGGCGATATTTTTAAGTCGCTATG
ATAAACCGATTGCAGGCTCAGTGGTCATGGTTAGCCGTGAAGGTACCAGACCGCTACTGGTTGAAGTACAAGCGTTGGTC
GATGAATCGCAAGGACAACCTAGGCGCATGGCATTAGGTTTAGATTATCAGCGCTTAGCCATGTTGCTGGCAGTGATGCA
CCGTCATGGCGGTATCCAAACCAATGGGCAAGATGTGTACGTCAATGTGGTAGGCGGTGTCAAGGTGCTTGAAACAGGCT
CAGATTTGGCGGTGTTATTAGCCTGTGCCTCTAGTATTAAAGAAAAGCCTTTGCCTTATACTCTAGCAGTATTTGGTGAA
GTGGGCTTATCGGGTGAAATCAGACCTGTGCCCAATGGTCAAGAACGTCTAAAAGAAGCGGTGAAACATGGCTTTACCCA
TGCGATTGTACCCAAAGCCAATGCCCCAAAAACGCAATTAGAGCAATATCAAGGTCTCAAAATCATCGCGGTTGAGCGAC
TAGACGATGCGATTGATAGCGCCTTTAATTATCTATAA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(376-462)

AAA domain (AAA_25)

(86-227)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.527

100

0.475
  radA Streptococcus mitis NCTC 12261

45.14

99.57

0.449
  radA Streptococcus pneumoniae Rx1

45.14

99.57

0.449
  radA Streptococcus pneumoniae D39

45.14

99.57

0.449
  radA Streptococcus pneumoniae R6

45.14

99.57

0.449
  radA Streptococcus pneumoniae TIGR4

45.14

99.57

0.449
  radA Streptococcus mitis SK321

45.14

99.57

0.449