Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   I6J32_RS02060 Genome accession   NZ_CP069437
Coordinates   344834..345706 (-) Length   290 a.a.
NCBI ID   WP_204155987.1    Uniprot ID   -
Organism   Moraxella osloensis strain FDAARGOS_1202     
Function   assists with secretin assembly and localization (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339834..350706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J32_RS02040 (I6J32_02040) - 340511..341332 (-) 822 WP_204155984.1 YfgM family protein -
  I6J32_RS02045 (I6J32_02045) hisS 341398..342696 (-) 1299 WP_204155985.1 histidine--tRNA ligase -
  I6J32_RS02050 (I6J32_02050) ispG 342744..343859 (-) 1116 WP_204155986.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  I6J32_RS02055 (I6J32_02055) - 343924..344832 (-) 909 WP_099808110.1 helix-turn-helix domain-containing protein -
  I6J32_RS02060 (I6J32_02060) pilF 344834..345706 (-) 873 WP_204155987.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  I6J32_RS02065 (I6J32_02065) rlmN 346008..347207 (-) 1200 WP_409929112.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  I6J32_RS02070 (I6J32_02070) dusB 347806..348804 (+) 999 WP_204155988.1 tRNA dihydrouridine synthase DusB -
  I6J32_RS02075 (I6J32_02075) - 348999..349637 (+) 639 WP_204155989.1 peroxiredoxin -
  I6J32_RS02080 (I6J32_02080) - 349939..350616 (+) 678 WP_204155990.1 META domain-containing protein -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 31783.41 Da        Isoelectric Point: 9.9739

>NTDB_id=466565 I6J32_RS02060 WP_204155987.1 344834..345706(-) (pilF) [Moraxella osloensis strain FDAARGOS_1202]
MPGKSNFLSKVFLSKIFAAAMIGLSSLTLCLTGCSTTRQVTTQTVTASDPSRWEKNPEEIARIRTAIAAEYIRGGKLDDA
KRQLESALKSYPKSAEANDMMGVLLQQEGSPRNMQKAEAYFKNAIALNPDFSQANNNYGVYLAQLSRNQEAIAQFQIAGS
ALGYDGRASALENLGRTALKVKNKPLAIQSFIKALDANRQSIVARTELIDILLADGKFLEAQALYNDLVKIIGQSNLDPR
TLSQGIRLAKLANNTIEVQKLAQQLLDRYPLSDEAKQIRSGLLTPTSTWK

Nucleotide


Download         Length: 873 bp        

>NTDB_id=466565 I6J32_RS02060 WP_204155987.1 344834..345706(-) (pilF) [Moraxella osloensis strain FDAARGOS_1202]
ATGCCGGGCAAATCAAATTTTTTATCGAAGGTTTTTTTATCTAAGATTTTTGCCGCAGCTATGATTGGTCTTTCAAGCCT
CACCCTTTGCCTAACCGGTTGTAGCACCACCCGACAAGTTACCACGCAGACAGTCACCGCAAGTGACCCAAGTCGCTGGG
AAAAAAATCCAGAAGAAATCGCCAGAATTCGCACCGCGATTGCCGCTGAATATATTCGTGGTGGAAAATTGGACGATGCC
AAACGACAGTTAGAAAGTGCATTAAAGTCTTATCCAAAGTCAGCAGAAGCCAATGATATGATGGGTGTGTTATTGCAGCA
AGAAGGCAGCCCGCGCAATATGCAAAAAGCCGAAGCTTATTTTAAAAACGCCATCGCACTCAATCCTGACTTTAGTCAAG
CAAACAACAACTATGGCGTCTATCTCGCCCAACTCAGTCGTAACCAAGAAGCGATTGCCCAGTTTCAAATTGCGGGTTCT
GCCTTAGGATATGACGGTCGTGCCAGTGCGTTAGAGAATTTAGGTCGTACAGCATTAAAGGTCAAAAACAAACCGCTGGC
GATACAATCATTTATCAAGGCGCTCGATGCCAACCGCCAAAGCATCGTCGCCCGTACAGAGCTTATTGATATTTTATTGG
CTGATGGCAAATTTTTGGAGGCGCAGGCACTGTATAATGATTTGGTTAAAATTATTGGTCAATCCAACCTTGACCCGCGC
ACTTTATCGCAAGGGATTAGGCTTGCCAAACTTGCGAACAATACCATAGAAGTGCAAAAATTAGCGCAGCAGCTTTTGGA
TCGCTATCCACTTAGCGATGAAGCAAAGCAGATTCGTTCTGGACTTTTAACCCCAACGTCAACTTGGAAATAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_16)

(113-157)

Tetratricopeptide repeat (TPR_16)

(68-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baylyi ADP1

41.901

97.931

0.41
  pilF Acinetobacter baumannii D1279779

42.642

91.379

0.39