Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   JQM34_RS06700 Genome accession   NZ_CP069427
Coordinates   1406441..1407211 (-) Length   256 a.a.
NCBI ID   WP_200370599.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1401441..1412211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQM34_RS06660 - 1403227..1403436 (-) 210 WP_000869801.1 hypothetical protein -
  JQM34_RS06665 (JQM34_0001361) - 1403461..1403649 (-) 189 WP_000722238.1 hypothetical protein -
  JQM34_RS09785 - 1403729..1403941 (-) 213 WP_049549866.1 hypothetical protein -
  JQM34_RS06670 (JQM34_0001362) - 1403966..1404121 (-) 156 WP_000661692.1 hypothetical protein -
  JQM34_RS06675 (JQM34_0001363) - 1404271..1404447 (-) 177 WP_000793177.1 hypothetical protein -
  JQM34_RS06680 (JQM34_0001364) - 1404460..1404609 (-) 150 WP_033629144.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  JQM34_RS06685 (JQM34_0001365) - 1404624..1404767 (-) 144 WP_042901918.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  JQM34_RS06690 (JQM34_0001366) - 1405210..1405446 (-) 237 WP_000136435.1 acyl carrier protein -
  JQM34_RS06695 (JQM34_0001367) plsX 1405452..1406444 (-) 993 WP_200370597.1 phosphate acyltransferase PlsX -
  JQM34_RS06700 (JQM34_0001368) recO 1406441..1407211 (-) 771 WP_200370599.1 DNA repair protein RecO Machinery gene
  JQM34_RS06705 (JQM34_0001369) - 1407208..1408377 (-) 1170 WP_200370601.1 pyridoxal phosphate-dependent aminotransferase -
  JQM34_RS06710 (JQM34_0001370) - 1408529..1409539 (+) 1011 WP_200370603.1 YeiH family protein -
  JQM34_RS06715 (JQM34_0001371) - 1409568..1410005 (-) 438 WP_049538209.1 CoA-binding protein -
  JQM34_RS06720 (JQM34_0001372) - 1410126..1411094 (-) 969 WP_000010175.1 ribose-phosphate diphosphokinase -
  JQM34_RS06725 (JQM34_0001373) - 1411309..1411803 (-) 495 WP_025170864.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29811.24 Da        Isoelectric Point: 5.1808

>NTDB_id=466529 JQM34_RS06700 WP_200370599.1 1406441..1407211(-) (recO) [Streptococcus oralis strain SF100]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLASVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLRKTLELMEAGIDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKAEIKQELRKFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEDK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=466529 JQM34_RS06700 WP_200370599.1 1406441..1407211(-) (recO) [Streptococcus oralis strain SF100]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTCTACAATCGTAACTTTCGTGAGGATGACAAGCTAGTCAAGATCTT
TACCGAGCAAGCGGGCAAGCGCATGTTTTTCGTCAAACACGCTGGTCAGTCCAAACTAGCTTCTGTTATTCAGCCCTTGG
TGTTGGCACGATTTCTCTTGCGAATCAATGATGACGGGCTTAGCTACATCGAGGACTACCATGAGGTCATGACCTTTCCA
AAGATTAATAGTGATCTCTTTGTCATGGCCTATGCTACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGATAATCA
GCAGGATGCTCCCTTGTTTGCTTTCTTGAGGAAGACTCTGGAGTTGATGGAAGCAGGGATAGATTATCAGGTTTTAACCA
ATATTTTTGAAATTCAAATCTTGACTCGATTTGGGATCAGCCTTAATTTTAATGAGTGTGTCTTTTGCCATCGGGTCGGT
CAGGCCTTTGACTTTTCTTTTAAATATGGAGCCTGCCTTTGCCCAGAGCATTATCATGAAGATGAGAGACGTTGTCATCT
AAATCCCAATATCCCTTATCTGCTCAATCAATTTCAGGCTATTGATTTTGAAACCTTGGAGACCATTTCGCTTAAGGCAG
AAATCAAGCAAGAGCTACGCAAGTTTATGGATCAACTCTACGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCGGACTGGGGACAATTACTAAAAGAGGAAGATAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

96.484

100

0.965