Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JQM34_RS05315 Genome accession   NZ_CP069427
Coordinates   1123860..1124456 (+) Length   198 a.a.
NCBI ID   WP_200370427.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1118860..1129456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQM34_RS05290 (JQM34_0001078) - 1119766..1121211 (-) 1446 WP_200370419.1 cell division site-positioning protein MapZ family protein -
  JQM34_RS05295 (JQM34_0001079) - 1121224..1122381 (-) 1158 WP_000662905.1 class I SAM-dependent RNA methyltransferase -
  JQM34_RS05305 (JQM34_0001080) gpsB 1122867..1123196 (-) 330 WP_000146523.1 cell division regulator GpsB -
  JQM34_RS05310 (JQM34_0001081) - 1123266..1123793 (-) 528 WP_200370425.1 DUF1273 domain-containing protein -
  JQM34_RS05315 (JQM34_0001082) recU 1123860..1124456 (+) 597 WP_200370427.1 Holliday junction resolvase RecU Machinery gene
  JQM34_RS05320 (JQM34_0001083) pbp1a 1124453..1126621 (+) 2169 WP_084917713.1 penicillin-binding protein PBP1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23075.50 Da        Isoelectric Point: 9.8088

>NTDB_id=466504 JQM34_RS05315 WP_200370427.1 1123860..1124456(+) (recU) [Streptococcus oralis strain SF100]
MVNYPHKISSQKRQAPLSQAKNFANRGMSFEKMINATNDYYLSHGLAVIHKKPTPIQIVRVDYPQRSRAKIVEAYFRQAS
TTDYSGVYDGYYIDFEAKETRQKHAIPMKNFHLHQIQHMEQVLAQQGICFVLLHFSSQQETYLLPAIDLIRFYHQDKGQK
SMPLGYIRENGYRIEPGVFPQIPYLDIIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=466504 JQM34_RS05315 WP_200370427.1 1123860..1124456(+) (recU) [Streptococcus oralis strain SF100]
ATGGTCAACTATCCACATAAAATTTCATCTCAAAAGAGACAAGCACCCCTGTCACAAGCTAAGAATTTCGCAAATCGGGG
AATGTCTTTTGAAAAGATGATCAATGCTACGAACGACTACTATTTGTCGCATGGGTTAGCTGTTATTCACAAGAAACCGA
CTCCCATCCAAATTGTACGTGTTGATTATCCCCAACGAAGTCGAGCCAAGATTGTTGAAGCCTACTTCAGACAAGCCTCA
ACTACTGACTATTCAGGGGTTTATGATGGATACTACATCGACTTTGAAGCAAAGGAAACCAGGCAAAAACATGCGATTCC
GATGAAGAATTTTCATCTCCATCAGATCCAGCATATGGAACAAGTCCTTGCCCAGCAAGGAATCTGCTTTGTACTCCTTC
ACTTTTCTTCTCAGCAAGAAACCTACTTATTACCGGCTATTGACTTGATCCGTTTCTATCATCAGGATAAGGGACAGAAG
TCAATGCCACTTGGATATATTCGAGAAAATGGATATAGGATTGAGCCTGGTGTCTTTCCTCAAATTCCCTACCTCGACAT
TATCAAAGAACATTTACTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49

100

0.495