Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H0E72_RS14200 Genome accession   NZ_CP059003
Coordinates   2906226..2906855 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2D     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2901226..2911855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0E72_RS14185 (H0E72_14185) helD 2901468..2903522 (-) 2055 WP_012311774.1 DNA helicase IV -
  H0E72_RS14190 (H0E72_14190) yccF 2903645..2904091 (+) 447 WP_001261235.1 YccF domain-containing protein -
  H0E72_RS14195 (H0E72_14195) yccS 2904101..2906263 (+) 2163 WP_000875033.1 YccS family putative transporter -
  H0E72_RS14200 (H0E72_14200) sxy/tfoX 2906226..2906855 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H0E72_RS14205 (H0E72_14205) sulA 2907074..2907583 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  H0E72_RS14210 (H0E72_14210) ompA 2907939..2908991 (+) 1053 WP_024175778.1 porin OmpA -
  H0E72_RS14215 (H0E72_14215) matP 2909067..2909519 (-) 453 WP_000877166.1 macrodomain Ter protein MatP -
  H0E72_RS14220 (H0E72_14220) ycbZ 2909705..2911465 (+) 1761 WP_000156473.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=466504 H0E72_RS14200 WP_000839153.1 2906226..2906855(-) (sxy/tfoX) [Escherichia coli strain 2D]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=466504 H0E72_RS14200 WP_000839153.1 2906226..2906855(-) (sxy/tfoX) [Escherichia coli strain 2D]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACTGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCTCG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1