Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JQM34_RS01485 Genome accession   NZ_CP069427
Coordinates   321219..322886 (+) Length   555 a.a.
NCBI ID   WP_200371272.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 316219..327886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQM34_RS01455 (JQM34_000301) udk 316811..317449 (+) 639 WP_033688753.1 uridine kinase -
  JQM34_RS01460 (JQM34_000302) xseA 317578..318918 (+) 1341 WP_129325580.1 exodeoxyribonuclease VII large subunit -
  JQM34_RS01465 (JQM34_000303) - 318896..319108 (+) 213 WP_000043226.1 exodeoxyribonuclease VII small subunit -
  JQM34_RS01470 (JQM34_000304) - 319105..319980 (+) 876 WP_200371270.1 polyprenyl synthetase family protein -
  JQM34_RS01475 (JQM34_000305) - 319973..320788 (+) 816 WP_200371271.1 TlyA family RNA methyltransferase -
  JQM34_RS01480 (JQM34_000306) - 320781..321212 (+) 432 WP_001034390.1 arginine repressor -
  JQM34_RS01485 (JQM34_000307) recN 321219..322886 (+) 1668 WP_200371272.1 DNA repair protein RecN Machinery gene
  JQM34_RS01490 (JQM34_000308) - 322887..323615 (+) 729 WP_000133347.1 metallophosphoesterase family protein -
  JQM34_RS01495 (JQM34_000309) lepA 323694..325517 (+) 1824 WP_001047193.1 translation elongation factor 4 -
  JQM34_RS01500 (JQM34_000310) - 325658..326281 (+) 624 WP_200371273.1 hypothetical protein -
  JQM34_RS01505 (JQM34_000311) dprA/cilB/dalA 326362..327210 (+) 849 WP_084921812.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62694.04 Da        Isoelectric Point: 4.5289

>NTDB_id=466466 JQM34_RS01485 WP_200371272.1 321219..322886(+) (recN) [Streptococcus oralis strain SF100]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNLMLGARATTDVIRHGAPKAEIEGLFSAENSRLLQELF
DEQGLELGDEIIIRREILQNGRSVSRVNGQMVNLSVLRAIGQHLVDIHGQHDQEELMRPQLHIQMLDEFGDATFLDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNEE
FSSLANVRSAMNDMESVEEYDTEYREISSSLSETYYVLEDITKRLEDIIDDLDFDGNRLMQVENRLDLINTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVDLAGQLASARHDLAQQLEAEIKQELQDLYMEKAQFQVRFSK
SKFSREGNEAVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSTVRLLTLEERVEEVAKMLAGENVTEAALTQARELLQTRMK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=466466 JQM34_RS01485 WP_200371272.1 321219..322886(+) (recN) [Streptococcus oralis strain SF100]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCGATTTCCCTCAATTTTGAAAAGGGTATGACTGTTTT
AACCGGGGAAACGGGTGCTGGAAAGTCTATTATTATTGACGCTATGAATCTCATGTTGGGGGCTCGTGCAACGACAGATG
TTATTCGTCATGGTGCGCCAAAAGCAGAGATTGAGGGGCTTTTCTCAGCTGAAAACAGTCGCCTTTTGCAGGAACTTTTT
GATGAGCAAGGTTTAGAATTGGGCGATGAGATCATCATCCGCCGGGAAATTTTACAAAACGGTCGTAGTGTTAGTCGTGT
GAATGGTCAGATGGTCAATCTTTCTGTCTTGCGTGCTATTGGGCAGCACCTTGTGGATATCCATGGTCAGCATGACCAAG
AGGAGTTAATGCGCCCTCAACTGCACATCCAGATGTTGGATGAGTTTGGTGATGCTACTTTCTTGGACTTGAAGGAGACC
TATCAGACGAGCTTTGATGCCTATCGCAAAATGCGCAAGCAGGTTCTTGAAGTTAAGAAAAACCAGCAGGAACACAAGGC
TCGTATTGAGATGTTGGAATTTCAAATGGCAGAGATTGAGGCTGCAAACTTGCAGGCTGGTGAAGACTTGGCTCTCAACC
AAGAACGAGATAAGCTTCTCAATCATAAAAATATTGCGGATACGCTAACCAATGCCTATAGCATGTTAGACAATGAGGAA
TTCTCCAGTCTTGCTAATGTCCGTTCAGCCATGAATGACATGGAAAGTGTTGAAGAATACGACACTGAATACCGTGAAAT
TTCAAGTTCTCTGTCTGAGACCTACTATGTTTTAGAAGATATTACCAAGCGTTTGGAAGATATTATTGATGACTTGGATT
TTGATGGTAATCGTCTCATGCAGGTTGAAAATCGCTTAGACCTTATAAATACTATTACACGCAAGTACGGTGGAACTGTG
GACGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAGTACAATCTCTTGACTGGAAATAATCTTTCTTCCGAAGATAT
GGAAGCAGAACTCAAGAAATTGGAAGTTAATCTTGTTGATTTGGCAGGTCAGCTTGCATCTGCTCGCCATGATTTGGCCC
AGCAGCTTGAGGCAGAGATTAAACAAGAACTGCAAGATCTCTATATGGAGAAGGCTCAATTTCAGGTTCGCTTTAGTAAG
AGTAAGTTCAGCCGTGAAGGAAATGAAGCAGTCGAATTTTACATTTCCACCAACCCAGGTGAGGACTTTAAGCCTTTGGT
CAAAGTTGCATCTGGTGGGGAATTATCCCGCCTCATGCTAGCTATTAAATCCGCCTTTTCTCGCAAAGAAGGTAAGACTA
GTATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTGGCCCAAGCCATTGCGCAAAAGATTCATAAGATTGGT
CAGCATGGTCAGGTTCTTGCTATTTCTCACCTTCCACAAGTGATTGCCATCGCGGATTATCAATTCTTTATTGAGAAGAT
TAGCGATGAGCACTCAACGGTGTCGACGGTTCGCCTTTTGACTTTAGAAGAGCGAGTAGAGGAAGTAGCTAAGATGTTGG
CTGGGGAAAATGTAACCGAAGCTGCCCTTACCCAAGCCAGAGAATTATTGCAAACGAGGATGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.662

100

0.447