Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H0I25_RS03490 Genome accession   NZ_CP058988
Coordinates   796673..798034 (-) Length   453 a.a.
NCBI ID   WP_218693751.1    Uniprot ID   -
Organism   Cellulophaga sp. HaHa_2_95     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 791673..803034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0I25_RS03465 (H0I25_03465) - 791828..792871 (-) 1044 WP_218693747.1 OmpA family protein -
  H0I25_RS03470 (H0I25_03470) - 793005..793523 (-) 519 WP_218693748.1 hypothetical protein -
  H0I25_RS03475 (H0I25_03475) - 793694..794455 (+) 762 WP_218693749.1 exodeoxyribonuclease III -
  H0I25_RS03480 (H0I25_03480) - 794532..795572 (+) 1041 WP_218693750.1 aldo/keto reductase -
  H0I25_RS03485 (H0I25_03485) - 795573..796631 (-) 1059 WP_025616506.1 proline iminopeptidase-family hydrolase -
  H0I25_RS03490 (H0I25_03490) radA 796673..798034 (-) 1362 WP_218693751.1 DNA repair protein RadA Machinery gene
  H0I25_RS03500 (H0I25_03500) - 798617..798991 (-) 375 WP_218693753.1 hypothetical protein -
  H0I25_RS03505 (H0I25_03505) - 799057..800199 (-) 1143 WP_218693754.1 alpha/beta hydrolase -
  H0I25_RS03510 (H0I25_03510) - 800227..801189 (-) 963 WP_218693755.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  H0I25_RS03515 (H0I25_03515) panD 801194..801544 (-) 351 WP_024482662.1 aspartate 1-decarboxylase -
  H0I25_RS03520 (H0I25_03520) panC 801562..802407 (-) 846 WP_255569690.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49789.18 Da        Isoelectric Point: 6.3721

>NTDB_id=466350 H0I25_RS03490 WP_218693751.1 796673..798034(-) (radA) [Cellulophaga sp. HaHa_2_95]
MAKTKTAFFCQNCGTQYAKWVGQCTACKEWNTVVEEVIQKEEKSSWKTPTNTAKKVSKPLRVNEISTEKELRLNTFDLEF
NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQIALKLPYKTLYVSGEESQKQIKMRADRIHPNSDTCFILTETKTQNIFKQI
EDTEPDIVVIDSIQTLHSDHIESAAGSISQIRECTAELIKFAKETNTPVILIGHITKDGSIAGPKILEHMVDSVLQFEGD
RNYVYRILRSLKNRFGSTSELGIYEMQGSGLREVNNPSEILISKNDEGLSGTAIASTVEGMRPLMIEIQALVSTAVYGTP
QRSTTGYNAKRLNMLLAVLEKRAGFKLAAKDVFLNITGGISVDDPAIDLAVIAAILSSNEDIAIEKGVCFAAEVGLAGEI
RPVQRVEQRITEAEKLGFDTIFVSKNNKISLKNTQINIQLVAKIEDVANYLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=466350 H0I25_RS03490 WP_218693751.1 796673..798034(-) (radA) [Cellulophaga sp. HaHa_2_95]
ATGGCTAAAACGAAAACAGCTTTTTTTTGTCAGAATTGTGGCACTCAATATGCTAAATGGGTAGGACAATGTACTGCTTG
TAAAGAATGGAATACCGTTGTTGAAGAAGTTATCCAAAAAGAAGAAAAATCTAGCTGGAAGACTCCGACAAATACTGCTA
AGAAAGTTTCAAAACCATTACGAGTTAATGAAATTAGTACGGAGAAAGAATTACGATTAAATACATTTGATCTAGAATTT
AATCGTGTTTTAGGTGGCGGTCTTGTACCTGGCTCTTTGACCCTTTTAGGAGGTGAACCTGGAATAGGAAAGAGTACACT
GCTACTTCAAATTGCCTTAAAACTACCTTACAAAACGCTGTACGTATCTGGAGAGGAGAGTCAGAAGCAAATAAAAATGC
GTGCAGACCGTATTCACCCGAACAGCGATACCTGTTTTATTCTTACAGAAACAAAAACTCAAAATATCTTTAAGCAAATA
GAAGATACCGAGCCAGATATTGTGGTAATTGACTCCATACAGACGCTACATTCTGATCATATTGAATCTGCCGCCGGAAG
TATTTCTCAAATTAGAGAATGTACAGCTGAGCTTATTAAATTTGCCAAAGAAACCAATACTCCCGTGATCTTAATTGGCC
ATATTACTAAAGATGGTTCTATTGCCGGTCCAAAAATTTTAGAACACATGGTAGATAGTGTCCTTCAATTTGAAGGCGAT
CGCAATTATGTATACCGGATTTTACGCTCCTTAAAAAATAGGTTTGGCTCTACTTCTGAACTAGGAATTTATGAAATGCA
AGGCAGTGGCTTGCGGGAAGTGAATAACCCGTCTGAAATTTTAATTTCTAAAAATGATGAAGGCTTAAGTGGTACCGCAA
TAGCATCTACTGTAGAAGGCATGCGCCCTCTTATGATAGAAATACAAGCTTTGGTAAGTACTGCTGTTTACGGTACACCT
CAACGTTCTACAACGGGTTATAATGCCAAACGTTTAAACATGCTTTTGGCGGTATTAGAAAAGCGTGCTGGTTTTAAATT
AGCCGCAAAAGATGTGTTCCTAAATATAACAGGAGGTATTTCCGTAGACGATCCTGCCATTGATTTGGCTGTAATTGCCG
CTATACTTTCTAGCAATGAAGATATTGCCATAGAAAAAGGAGTGTGTTTTGCTGCAGAAGTTGGATTAGCTGGCGAAATA
CGCCCTGTACAACGCGTAGAACAACGCATTACCGAAGCCGAAAAATTAGGATTTGATACTATTTTCGTTTCCAAGAACAA
TAAAATTAGTCTAAAAAATACGCAGATAAACATTCAACTGGTAGCAAAAATTGAAGATGTAGCCAACTATTTATTTGGAT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-219)

Subunit ChlI of Mg-chelatase (ChlI)

(338-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

47.807

100

0.481
  radA Streptococcus pneumoniae Rx1

47.807

100

0.481
  radA Streptococcus pneumoniae R6

47.807

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.807

100

0.481
  radA Streptococcus mitis SK321

47.473

100

0.477
  radA Streptococcus mitis NCTC 12261

47.473

100

0.477
  radA Bacillus subtilis subsp. subtilis str. 168

50.233

94.923

0.477