Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   JQ456_RS26910 Genome accession   NZ_CP069337
Coordinates   5817887..5818411 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain E04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5812887..5823411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQ456_RS26895 (JQ456_26880) aroB 5814003..5815109 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  JQ456_RS26900 (JQ456_26885) aroK 5815159..5815677 (-) 519 WP_003095833.1 shikimate kinase AroK -
  JQ456_RS26905 (JQ456_26890) pilQ 5815689..5817833 (-) 2145 WP_003103267.1 type 4a pilus secretin PilQ Machinery gene
  JQ456_RS26910 (JQ456_26895) comL/pilP 5817887..5818411 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  JQ456_RS26915 (JQ456_26900) pilO 5818408..5819031 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  JQ456_RS26920 (JQ456_26905) pilN 5819028..5819624 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  JQ456_RS26925 (JQ456_26910) pilM 5819624..5820688 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  JQ456_RS26930 (JQ456_26915) - 5820873..5823344 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=466265 JQ456_RS26910 WP_003095836.1 5817887..5818411(-) (comL/pilP) [Pseudomonas aeruginosa strain E04]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=466265 JQ456_RS26910 WP_003095836.1 5817887..5818411(-) (comL/pilP) [Pseudomonas aeruginosa strain E04]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362