Detailed information NTG0466202

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JQ456_RS06990
• Genome accession: NZ_CP069337
• Coordinates: 1482514..1483518 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain E04
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1477514..1488518

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JQ456_RS06960 (JQ456_06955)	fghA	1477606..1478457 (+)	852	WP_023116357.1	S-formylglutathione hydrolase	-
JQ456_RS06965 (JQ456_06960)	ispF	1478528..1479001 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JQ456_RS06970 (JQ456_06965)	truD	1478998..1480065 (+)	1068	WP_023104619.1	tRNA pseudouridine(13) synthase TruD	-
JQ456_RS06975 (JQ456_06970)	surE	1480053..1480802 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
JQ456_RS06980 (JQ456_06975)	-	1480835..1481470 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
JQ456_RS06985 (JQ456_06980)	-	1481516..1482409 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
JQ456_RS06990 (JQ456_06985)	rpoS	1482514..1483518 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
JQ456_RS06995 (JQ456_06990)	fdxA	1483945..1484268 (-)	324	WP_003119354.1	ferredoxin FdxA	-
JQ456_RS07000 (JQ456_06995)	mutS	1484335..1486902 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
JQ456_RS07005 (JQ456_07000)	-	1487028..1488035 (-)	1008	WP_089034879.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=466202 JQ456_RS06990 WP_003113871.1 1482514..1483518(+) (rpoS) [Pseudomonas aeruginosa strain E04]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=466202 JQ456_RS06990 WP_003113871.1 1482514..1483518(+) (rpoS) [Pseudomonas aeruginosa strain E04]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653