Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HZU75_RS13515 Genome accession   NZ_CP058952
Coordinates   2826104..2827459 (+) Length   451 a.a.
NCBI ID   WP_180306542.1    Uniprot ID   A0A7D5Z969
Organism   Chitinibacter fontanus strain STM-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2821104..2832459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZU75_RS13500 (HZU75_13500) flgJ 2821511..2822437 (+) 927 WP_180306539.1 flagellar assembly peptidoglycan hydrolase FlgJ -
  HZU75_RS13505 (HZU75_13505) flgK 2822466..2824658 (+) 2193 WP_180306540.1 flagellar hook-associated protein FlgK -
  HZU75_RS13510 (HZU75_13510) flgL 2824685..2826043 (+) 1359 WP_180306541.1 flagellar hook-associated protein FlgL -
  HZU75_RS13515 (HZU75_13515) radA 2826104..2827459 (+) 1356 WP_180306542.1 DNA repair protein RadA Machinery gene
  HZU75_RS13520 (HZU75_13520) trxA 2827611..2827937 (+) 327 WP_180306543.1 thioredoxin TrxA -
  HZU75_RS13525 (HZU75_13525) rho 2828071..2829327 (+) 1257 WP_180306544.1 transcription termination factor Rho -
  HZU75_RS13530 (HZU75_13530) rpmE 2829412..2829621 (+) 210 WP_180306545.1 50S ribosomal protein L31 -
  HZU75_RS13535 (HZU75_13535) - 2829712..2831340 (+) 1629 WP_180306546.1 glycosyltransferase family 39 protein -
  HZU75_RS13540 (HZU75_13540) - 2831414..2831569 (-) 156 WP_180306547.1 DUF3149 domain-containing protein -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48149.78 Da        Isoelectric Point: 7.7384

>NTDB_id=466145 HZU75_RS13515 WP_180306542.1 2826104..2827459(+) (radA) [Chitinibacter fontanus strain STM-7]
MSKAKNQFVCRLCGGVSPKWQGQCPQCGEWNSLEEQQAQAAVTTGRFQSLAADGAIKNLSDVEAEELPRTPTHLAELDRV
LGGGLVPGGVVLIGGDPGIGKSTLLLQALAKLSETLAVLYVSGEESAQQIALRARRLGVPAAKVRLYPEISLEKILLALE
KESPKVVVIDSIQTIYTEALTSAPGSVAQVRECSAQLTRFAKRHGTSILLVGHVTKEGALAGPRVLEHIVDAVLYFEGDT
HSSFRLIRAIKNRFGAVNELGVFAMTDKGLREVANPSALFLSQHDTPVPGSCVMVTQEGSRPMLVEVQALVDDAHAAQVK
RLAVGVEQNRLALLLAVLHRHAGIAAFDQDVFINAVGGVRIVEPAADLAMLIAIVSSLKNRALPNKMVVFGEVGLAGEVR
PVQRGQERLREAAKLGFTHAIVPKANKPKQAIEGMVIVAVDRLEQAVEAAF

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=466145 HZU75_RS13515 WP_180306542.1 2826104..2827459(+) (radA) [Chitinibacter fontanus strain STM-7]
ATGAGTAAAGCAAAAAACCAATTTGTTTGTCGCCTTTGTGGTGGTGTGTCTCCCAAATGGCAAGGGCAATGCCCGCAATG
TGGTGAGTGGAATAGTCTGGAAGAGCAGCAAGCTCAGGCTGCAGTGACTACGGGGCGCTTTCAAAGTCTTGCTGCTGATG
GCGCGATCAAGAATTTATCGGATGTTGAGGCTGAGGAATTGCCTAGAACTCCAACCCATTTGGCAGAGTTAGACCGTGTA
CTTGGTGGTGGATTGGTGCCAGGCGGTGTTGTGCTTATTGGTGGAGATCCAGGTATCGGTAAATCAACCTTATTGCTACA
GGCATTGGCTAAATTATCCGAGACGTTAGCTGTGCTTTATGTCAGCGGTGAAGAGTCTGCTCAGCAGATTGCTTTGCGGG
CACGACGATTAGGGGTTCCGGCGGCAAAAGTTCGTTTATACCCAGAAATTAGCCTAGAAAAGATTTTGCTTGCGCTGGAA
AAAGAGTCACCCAAAGTCGTTGTAATTGATTCAATTCAAACGATTTATACCGAAGCTTTAACCAGTGCTCCTGGTAGCGT
AGCTCAAGTGCGTGAATGTTCAGCTCAATTGACCCGTTTTGCCAAGCGGCATGGCACCTCGATTTTATTGGTTGGGCATG
TTACCAAAGAGGGGGCATTGGCCGGGCCGCGCGTGTTGGAGCACATTGTTGATGCCGTACTGTACTTTGAAGGAGATACC
CATTCGAGTTTTCGCTTGATCCGTGCTATCAAGAATCGCTTTGGGGCCGTTAATGAGTTGGGGGTGTTTGCCATGACGGA
TAAAGGTTTACGCGAGGTAGCCAATCCGTCTGCATTGTTCTTGAGTCAACACGACACTCCGGTGCCAGGGTCTTGCGTCA
TGGTTACTCAAGAGGGATCGCGTCCAATGCTAGTTGAAGTGCAGGCGCTGGTTGATGATGCGCATGCCGCGCAGGTTAAA
CGGCTTGCTGTTGGGGTTGAGCAAAATCGCTTAGCTTTGCTGCTTGCCGTGTTACATCGACACGCAGGAATTGCCGCGTT
TGACCAAGATGTATTTATCAACGCGGTTGGCGGTGTACGAATAGTTGAGCCCGCTGCTGATTTGGCAATGTTGATTGCGA
TTGTGTCGTCACTGAAGAATCGGGCATTGCCAAATAAAATGGTTGTTTTTGGCGAAGTAGGTTTGGCGGGGGAGGTAAGA
CCCGTGCAGCGTGGACAGGAAAGATTGCGCGAGGCTGCCAAGCTCGGTTTTACCCATGCAATTGTACCCAAGGCGAATAA
ACCTAAACAAGCTATCGAGGGGATGGTTATCGTTGCAGTCGATCGTCTAGAGCAGGCCGTTGAGGCTGCTTTCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(359-426)

AAA domain (AAA_25)

(74-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D5Z969

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.722

100

0.488
  radA Streptococcus mitis NCTC 12261

47.033

100

0.475
  radA Streptococcus pneumoniae Rx1

49.528

94.013

0.466
  radA Streptococcus pneumoniae D39

49.528

94.013

0.466
  radA Streptococcus pneumoniae R6

49.528

94.013

0.466
  radA Streptococcus pneumoniae TIGR4

49.528

94.013

0.466
  radA Streptococcus mitis SK321

49.528

94.013

0.466