Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   HZ310_RS19320 Genome accession   NZ_CP058951
Coordinates   3759161..3760273 (-) Length   370 a.a.
NCBI ID   WP_061406450.1    Uniprot ID   -
Organism   Bacillus pumilus strain UAMX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3754161..3765273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ310_RS19305 (HZ310_19305) gyrA 3754190..3756691 (-) 2502 WP_180309739.1 DNA gyrase subunit A -
  HZ310_RS19310 (HZ310_19310) gyrB 3756924..3758840 (-) 1917 WP_058013868.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  HZ310_RS19315 (HZ310_19315) remB 3758898..3759143 (-) 246 WP_061406453.1 extracellular matrix regulator RemB -
  HZ310_RS19320 (HZ310_19320) recF 3759161..3760273 (-) 1113 WP_061406450.1 DNA replication/repair protein RecF Machinery gene
  HZ310_RS19325 (HZ310_19325) yaaA 3760290..3760505 (-) 216 WP_041815077.1 S4 domain-containing protein YaaA -
  HZ310_RS19330 (HZ310_19330) dnaN 3760656..3761792 (-) 1137 WP_041815072.1 DNA polymerase III subunit beta -
  HZ310_RS19335 (HZ310_19335) dnaA 3761989..3763329 (-) 1341 WP_058013178.1 chromosomal replication initiator protein DnaA -
  HZ310_RS19340 (HZ310_19340) rpmH 3763950..3764084 (+) 135 WP_008360908.1 50S ribosomal protein L34 -
  HZ310_RS19345 (HZ310_19345) rnpA 3764163..3764522 (+) 360 WP_003214983.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42545.61 Da        Isoelectric Point: 7.3662

>NTDB_id=466121 HZ310_RS19320 WP_061406450.1 3759161..3760273(-) (recF) [Bacillus pumilus strain UAMX]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQTDQAMLEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=466121 HZ310_RS19320 WP_061406450.1 3759161..3760273(-) (recF) [Bacillus pumilus strain UAMX]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAACAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCAATCTATGTATTGTCGATGGCAAAGTCGCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATTAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCCAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGCTAAACACCATCATGTTTGCACCAGAGGACTTAAGTCTTGTAAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGATATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATTCTCTCTCAGCGG
AATCATTACTTGAAACAACTGCAGACAAGAAAGCAAACGGATCAAGCGATGCTGGAGGTTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGTTGCATTTTGGCA
TATCTAGAGAGCTAGAAACACTCACGCTCCAATACCAAACGGCTATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGAGTGACGTTGTGGGGACCTCACAG
AGATGACCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATCGACTTGATACACGAAGAAATCGGAGAATATCCCATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCTTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGGAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.74

99.73

0.835