Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HZ310_RS19085 Genome accession   NZ_CP058951
Coordinates   3715986..3716276 (+) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus pumilus strain UAMX     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3710986..3721276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ310_RS19070 (HZ310_19070) - 3711169..3712371 (-) 1203 WP_180309726.1 G5 and 3D domain-containing protein -
  HZ310_RS19075 (HZ310_19075) - 3712616..3713383 (-) 768 WP_050945797.1 TatD family hydrolase -
  HZ310_RS19080 (HZ310_19080) metG 3713465..3715465 (-) 2001 WP_180309727.1 methionine--tRNA ligase -
  HZ310_RS19085 (HZ310_19085) abrB 3715986..3716276 (+) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  HZ310_RS19090 (HZ310_19090) rsmI 3716322..3717200 (-) 879 WP_180309728.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  HZ310_RS19095 (HZ310_19095) - 3717178..3717474 (-) 297 WP_003217970.1 GIY-YIG nuclease family protein -
  HZ310_RS19100 (HZ310_19100) - 3717461..3718204 (-) 744 WP_044140390.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  HZ310_RS19105 (HZ310_19105) yabA 3718260..3718613 (-) 354 WP_003217957.1 DNA replication initiation control protein YabA -
  HZ310_RS19110 (HZ310_19110) - 3718628..3719455 (-) 828 WP_180309729.1 stage 0 sporulation family protein -
  HZ310_RS19115 (HZ310_19115) holB 3719458..3720447 (-) 990 WP_058015828.1 DNA polymerase III subunit delta' -
  HZ310_RS19120 (HZ310_19120) - 3720459..3720899 (-) 441 WP_058015827.1 YaaR family protein -
  HZ310_RS19125 (HZ310_19125) - 3720912..3721241 (-) 330 WP_012008640.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=466119 HZ310_RS19085 WP_087975202.1 3715986..3716276(+) (abrB) [Bacillus pumilus strain UAMX]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=466119 HZ310_RS19085 WP_087975202.1 3715986..3716276(+) (abrB) [Bacillus pumilus strain UAMX]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938