Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   HZ310_RS17420 Genome accession   NZ_CP058951
Coordinates   3405578..3406006 (+) Length   142 a.a.
NCBI ID   WP_180309602.1    Uniprot ID   -
Organism   Bacillus pumilus strain UAMX     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3400578..3411006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ310_RS17410 (HZ310_17410) - 3401166..3403151 (-) 1986 WP_180309600.1 hydantoinase B/oxoprolinase family protein -
  HZ310_RS17415 (HZ310_17415) - 3403141..3405210 (-) 2070 WP_180309601.1 hydantoinase/oxoprolinase family protein -
  HZ310_RS17420 (HZ310_17420) nucA/comI 3405578..3406006 (+) 429 WP_180309602.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  HZ310_RS17425 (HZ310_17425) - 3406134..3407831 (+) 1698 WP_180309603.1 methyl-accepting chemotaxis protein -
  HZ310_RS17430 (HZ310_17430) - 3407952..3408338 (+) 387 WP_180309604.1 competence protein ComJ -
  HZ310_RS17435 (HZ310_17435) - 3408340..3409146 (-) 807 WP_180309605.1 aminoglycoside N(3)-acetyltransferase -
  HZ310_RS17440 (HZ310_17440) - 3409176..3409592 (-) 417 WP_034664465.1 Lrp/AsnC family transcriptional regulator -
  HZ310_RS17445 (HZ310_17445) - 3409708..3410472 (+) 765 WP_180309606.1 MBL fold metallo-hydrolase -
  HZ310_RS17450 (HZ310_17450) - 3410522..3410851 (-) 330 WP_058015304.1 YckD family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15875.81 Da        Isoelectric Point: 5.2262

>NTDB_id=466116 HZ310_RS17420 WP_180309602.1 3405578..3406006(+) (nucA/comI) [Bacillus pumilus strain UAMX]
MKLLKIILLLLLIIVGVATGYIQLEQGKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSVCTIDRKHSDEQREQS
LQGIPTKRGYDRDEWPMAMCKEGGTGASVKYISPSDNRGAGSWVGHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=466116 HZ310_RS17420 WP_180309602.1 3405578..3406006(+) (nucA/comI) [Bacillus pumilus strain UAMX]
ATGAAACTTCTTAAAATCATTCTCTTGCTTTTACTGATCATCGTTGGTGTAGCAACAGGCTATATTCAGCTGGAGCAAGG
TAAACAAGAGACGACGAATTCATCTTATGACAAAACGATTCACTTCCCATCAGATCGTTACCCCGAAACCGCGAAGCACA
TAGAAGAGGCAATTGATGAAGGCCATTCATCCGTATGTACAATTGACCGTAAACATAGCGATGAACAAAGAGAACAATCA
CTTCAAGGCATCCCAACAAAGCGCGGGTATGATCGGGACGAATGGCCGATGGCGATGTGTAAGGAAGGAGGAACAGGAGC
TTCAGTCAAATATATTAGTCCTTCGGATAATAGAGGAGCAGGCTCATGGGTCGGTCATCAACTATCTGATGATCCTGACG
GCACGAGAATACAATTTATCATCGATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

74.528

74.648

0.556