Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   HZ310_RS14220 Genome accession   NZ_CP058951
Coordinates   2708465..2709043 (-) Length   192 a.a.
NCBI ID   WP_180309277.1    Uniprot ID   -
Organism   Bacillus pumilus strain UAMX     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2703465..2714043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ310_RS14200 (HZ310_14200) - 2703697..2704614 (-) 918 WP_257474543.1 MFS transporter -
  HZ310_RS20020 - 2704575..2704862 (-) 288 WP_257474544.1 hypothetical protein -
  HZ310_RS14205 (HZ310_14205) - 2705000..2706361 (+) 1362 WP_257474545.1 PLP-dependent aminotransferase family protein -
  HZ310_RS14210 (HZ310_14210) - 2706399..2706881 (-) 483 WP_180309275.1 hypothetical protein -
  HZ310_RS14215 (HZ310_14215) - 2707199..2708305 (-) 1107 WP_180309276.1 D-TA family PLP-dependent enzyme -
  HZ310_RS14220 (HZ310_14220) comK 2708465..2709043 (-) 579 WP_180309277.1 competence protein ComK Regulator
  HZ310_RS14225 (HZ310_14225) - 2709333..2709563 (+) 231 WP_003210924.1 IDEAL domain-containing protein -
  HZ310_RS14230 (HZ310_14230) - 2709626..2710486 (-) 861 WP_180309278.1 SDR family oxidoreductase -
  HZ310_RS14235 (HZ310_14235) - 2710632..2712164 (+) 1533 WP_180309279.1 FAD-dependent oxidoreductase -
  HZ310_RS14240 (HZ310_14240) - 2712241..2713551 (+) 1311 Protein_2842 globin-coupled sensor protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22361.48 Da        Isoelectric Point: 9.3220

>NTDB_id=466110 HZ310_RS14220 WP_180309277.1 2708465..2709043(-) (comK) [Bacillus pumilus strain UAMX]
MSGISETPLDSYVINQTTMAVLPVEKGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVIFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=466110 HZ310_RS14220 WP_180309277.1 2708465..2709043(-) (comK) [Bacillus pumilus strain UAMX]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCAGTTGAAAAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGAATTTCCCACAAGCCTCCC
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAGGAATCATCCCTCGGAGACACGGTGGTCATCTTTACAAATGAGCAAACCGTCAAACTCG
ATGTCTCATATAAATCTTTTGAGAGTCAGGTACACAGAACAGCGTATCTCCGAACGAAATTTCAAGATCGCCTTGATGGT
GGTCTTCCTAAAAAACAAGAATTTATGCTGTATCCAAAGGAACAACAGCTCAACCTTGTATACGATTTTATATTAAGGGA
GCTACGGAACAGATATTAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615