Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   HZ310_RS12330 Genome accession   NZ_CP058951
Coordinates   2356792..2357253 (+) Length   153 a.a.
NCBI ID   WP_012009774.1    Uniprot ID   A0AAE4B719
Organism   Bacillus pumilus strain UAMX     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2351792..2362253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ310_RS12305 (HZ310_12305) - 2352275..2352772 (+) 498 WP_180309085.1 L,D-transpeptidase family protein -
  HZ310_RS12310 (HZ310_12310) - 2352846..2354123 (+) 1278 WP_180309086.1 MFS transporter -
  HZ310_RS12315 (HZ310_12315) - 2354240..2355595 (-) 1356 WP_180309087.1 IS1182 family transposase -
  HZ310_RS12320 (HZ310_12320) - 2355723..2355899 (-) 177 WP_180309088.1 hypothetical protein -
  HZ310_RS12325 (HZ310_12325) - 2356067..2356282 (+) 216 WP_012009775.1 hypothetical protein -
  HZ310_RS12330 (HZ310_12330) kre 2356792..2357253 (+) 462 WP_012009774.1 YkyB family protein Regulator
  HZ310_RS12335 (HZ310_12335) - 2357288..2358196 (-) 909 WP_012009773.1 chemotaxis protein -
  HZ310_RS12340 (HZ310_12340) - 2358270..2359580 (-) 1311 WP_180309089.1 MFS transporter -
  HZ310_RS12345 (HZ310_12345) - 2359706..2360245 (-) 540 WP_058014124.1 RDD family protein -
  HZ310_RS12350 (HZ310_12350) - 2360547..2360699 (+) 153 WP_162839369.1 hypothetical protein -
  HZ310_RS12355 (HZ310_12355) - 2360762..2361646 (-) 885 WP_180309090.1 cation diffusion facilitator family transporter -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17741.33 Da        Isoelectric Point: 10.2452

>NTDB_id=466099 HZ310_RS12330 WP_012009774.1 2356792..2357253(+) (kre) [Bacillus pumilus strain UAMX]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQLLQTYVGLKEKPTATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=466099 HZ310_RS12330 WP_012009774.1 2356792..2357253(+) (kre) [Bacillus pumilus strain UAMX]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACCAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAGCTGCTTCAAACGTATGTCGGTTTAAAAGAAAAACCTACCGCCA
CAAAACAAAAATCACATTATACAAAGCCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

76.623

100

0.771