Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   HZ310_RS12205 Genome accession   NZ_CP058951
Coordinates   2336749..2337330 (-) Length   193 a.a.
NCBI ID   WP_044142051.1    Uniprot ID   A0AB34QPU5
Organism   Bacillus pumilus strain UAMX     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2331749..2342330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ310_RS12175 (HZ310_12175) - 2331788..2332252 (-) 465 WP_180310807.1 molybdenum cofactor biosynthesis protein MoaE -
  HZ310_RS12180 (HZ310_12180) mobB 2332276..2332800 (-) 525 WP_180309074.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  HZ310_RS12185 (HZ310_12185) glp 2332782..2334059 (-) 1278 WP_257474519.1 gephyrin-like molybdotransferase Glp -
  HZ310_RS12190 (HZ310_12190) - 2334069..2335085 (-) 1017 WP_180309076.1 thiazole biosynthesis adenylyltransferase ThiF -
  HZ310_RS12195 (HZ310_12195) - 2335115..2335696 (-) 582 WP_180309077.1 molybdenum cofactor guanylyltransferase -
  HZ310_RS12200 (HZ310_12200) - 2335781..2336689 (+) 909 WP_180309078.1 sigmaE regulated sporulation protein -
  HZ310_RS12205 (HZ310_12205) rok 2336749..2337330 (-) 582 WP_044142051.1 transcriptional regulator Rok Regulator
  HZ310_RS12210 (HZ310_12210) - 2337801..2338259 (-) 459 WP_050945138.1 TlpA disulfide reductase family protein -
  HZ310_RS12215 (HZ310_12215) ahpA 2338342..2338884 (-) 543 WP_003211758.1 biofilm-specific peroxidase AhpA -
  HZ310_RS12220 (HZ310_12220) - 2339156..2339962 (+) 807 WP_180309079.1 mechanosensitive ion channel family protein -
  HZ310_RS12225 (HZ310_12225) - 2339992..2340234 (-) 243 WP_003211408.1 YkuS family protein -
  HZ310_RS12230 (HZ310_12230) - 2340285..2341415 (-) 1131 WP_180309080.1 N-acetyldiaminopimelate deacetylase -
  HZ310_RS12235 (HZ310_12235) dapD 2341497..2342207 (-) 711 WP_058014112.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21788.74 Da        Isoelectric Point: 9.7309

>NTDB_id=466098 HZ310_RS12205 WP_044142051.1 2336749..2337330(-) (rok) [Bacillus pumilus strain UAMX]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQP
PAQSQSNSASTLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=466098 HZ310_RS12205 WP_044142051.1 2336749..2337330(-) (rok) [Bacillus pumilus strain UAMX]
TTGTTTAATGAGAGGGAAGCGTTACGATTACGATTGGAACAATTAAACGAAGCAGAAGTCAAGGTCATCCGTGAATATCA
AATTGAGCGAGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AGGTGCGTACAGAAAGAAAAACGGATTCACTGCCTGTATTAGCTGAACTGGCTGCACAAGAAATGAGAAGCTACCAGCCG
CCTGCACAATCACAATCAAATTCTGCATCAACTTTAGGAACAGGACAGCTAAACGGTGCACCTGTAGGTATTCCTGAAGG
ATCTACAAGACGCAGAAGAGGCACAGCTCGCCCTGGTTCAAAGGCAGCTAAGCTTCGTGAAGCTGCGATTAAAACGTTAA
AGCGTCATAATGCAGCGATTAAAAGCTCTGAACTTCAAAAAGAAATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATG
ACAACGTTTATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAGCCATATCGCGGACAGTATATTTTAGAAGGCGA
TATTCAAACAGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.053

98.446

0.798