Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HZ310_RS12090 Genome accession   NZ_CP058951
Coordinates   2315545..2315823 (-) Length   92 a.a.
NCBI ID   WP_180309069.1    Uniprot ID   -
Organism   Bacillus pumilus strain UAMX     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2310545..2320823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ310_RS12070 (HZ310_12070) ade 2310552..2312282 (-) 1731 WP_180309067.1 adenine deaminase -
  HZ310_RS12075 (HZ310_12075) - 2312545..2313213 (-) 669 WP_012009816.1 TrkA family potassium uptake protein -
  HZ310_RS12080 (HZ310_12080) - 2313251..2314087 (-) 837 WP_061407658.1 gamma-glutamylcyclotransferase -
  HZ310_RS12085 (HZ310_12085) - 2314092..2315402 (-) 1311 WP_180309068.1 ATP-binding protein -
  HZ310_RS12090 (HZ310_12090) abrB 2315545..2315823 (-) 279 WP_180309069.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  HZ310_RS12095 (HZ310_12095) mreBH 2316100..2317107 (+) 1008 WP_012009812.1 rod-share determining protein MreBH -
  HZ310_RS12100 (HZ310_12100) - 2317182..2317313 (+) 132 WP_003210922.1 protein YkpC -
  HZ310_RS12105 (HZ310_12105) - 2317424..2318656 (+) 1233 WP_180309070.1 aminopeptidase -
  HZ310_RS12110 (HZ310_12110) - 2318759..2320113 (+) 1355 Protein_2407 IS1182 family transposase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10291.98 Da        Isoelectric Point: 4.6794

>NTDB_id=466097 HZ310_RS12090 WP_180309069.1 2315545..2315823(-) (abrB) [Bacillus pumilus strain UAMX]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHDYGNGQITLSAEGAE
LLLKELQEALKQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=466097 HZ310_RS12090 WP_180309069.1 2315545..2315823(-) (abrB) [Bacillus pumilus strain UAMX]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTAAGAAGAGCACTTGA
TATTGCTATTAAAGACAGTATGGAATTTTTTATAGATGGGGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGTGTTT
GCCTCATGACTGGTGAGATTACATCAGAGAACCATGATTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
TTACTGTTAAAAGAACTTCAAGAAGCTCTTAAGCAGTAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

53.261

100

0.533