Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HZ310_RS11265 Genome accession   NZ_CP058951
Coordinates   2152071..2152973 (-) Length   300 a.a.
NCBI ID   WP_180309015.1    Uniprot ID   -
Organism   Bacillus pumilus strain UAMX     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2147071..2157973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ310_RS11250 (HZ310_11250) xerC 2147447..2148364 (-) 918 WP_058013999.1 tyrosine recombinase XerC -
  HZ310_RS11255 (HZ310_11255) trmFO 2148427..2149731 (-) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HZ310_RS11260 (HZ310_11260) topA 2149802..2151877 (-) 2076 WP_058014000.1 type I DNA topoisomerase -
  HZ310_RS11265 (HZ310_11265) dprA 2152071..2152973 (-) 903 WP_180309015.1 DNA-processing protein DprA Machinery gene
  HZ310_RS11270 (HZ310_11270) sucD 2153037..2153939 (-) 903 WP_003212080.1 succinate--CoA ligase subunit alpha -
  HZ310_RS11275 (HZ310_11275) sucC 2153962..2155122 (-) 1161 WP_144462060.1 ADP-forming succinate--CoA ligase subunit beta -
  HZ310_RS11280 (HZ310_11280) - 2155299..2155574 (-) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  HZ310_RS11285 (HZ310_11285) - 2155571..2157307 (-) 1737 WP_180309016.1 glycosyltransferase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34034.40 Da        Isoelectric Point: 8.8739

>NTDB_id=466096 HZ310_RS11265 WP_180309015.1 2152071..2152973(-) (dprA) [Bacillus pumilus strain UAMX]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQTIDFTRLKQAEEKEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKHIYDPPPVLFLKGNISYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEDWTIVSGLAKGIDGIAH
KECIRNKGKTIGIIAGGFQHLYPKEHVKMAEYMGEHHLLLSEHPPYVKPEKWHFPLRNRLISALTSGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPAKLIQQGAKLVHSTKDILEEFSFRGVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=466096 HZ310_RS11265 WP_180309015.1 2152071..2152973(-) (dprA) [Bacillus pumilus strain UAMX]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCCCCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAACAATCGACTTTACCC
GCTTAAAACAAGCCGAAGAAAAAGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAACATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CATATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGCACACGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGATTGGACGATTGTCAGTGGCTTAGCAAAAGGCATTGATGGAATCGCACAC
AAAGAGTGCATTAGGAATAAAGGGAAAACGATTGGTATTATAGCAGGCGGATTTCAGCACTTATACCCAAAGGAACATGT
GAAAATGGCTGAATACATGGGCGAGCATCATTTGCTTTTGTCTGAGCATCCGCCTTATGTCAAACCAGAAAAGTGGCATT
TCCCTTTGAGGAATCGATTAATTAGTGCGCTAACAAGTGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCACTC
ATTACCGCGTATCAAGCACTTGAGCAAGGCAAAGAGGTATTTGCGGTTGCAGGATCAATCTTTGATCCTAATTCCACAGG
TCCAGCCAAACTTATACAGCAGGGAGCAAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTCCGCGGTG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Lactococcus lactis subsp. cremoris KW2

39.583

96

0.38