Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   HZ310_RS10195 Genome accession   NZ_CP058951
Coordinates   1940819..1941199 (-) Length   126 a.a.
NCBI ID   WP_244270805.1    Uniprot ID   -
Organism   Bacillus pumilus strain UAMX     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1935819..1946199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ310_RS10160 (HZ310_10160) - 1936419..1936649 (-) 231 WP_003211509.1 DUF896 domain-containing protein -
  HZ310_RS10165 (HZ310_10165) - 1936719..1937366 (-) 648 WP_061407941.1 recombinase family protein -
  HZ310_RS10170 (HZ310_10170) yneA 1937384..1937695 (-) 312 WP_003211955.1 cell division suppressor protein YneA -
  HZ310_RS10175 (HZ310_10175) lexA 1937855..1938475 (+) 621 WP_003212311.1 transcriptional repressor LexA -
  HZ310_RS10180 (HZ310_10180) - 1938521..1938955 (-) 435 WP_058015668.1 hypothetical protein -
  HZ310_RS10185 (HZ310_10185) - 1939250..1939792 (+) 543 WP_180308903.1 IseA DL-endopeptidase inhibitor family protein -
  HZ310_RS10190 (HZ310_10190) - 1939826..1940674 (-) 849 WP_061407940.1 STAS domain-containing protein -
  HZ310_RS10195 (HZ310_10195) nucA/comI 1940819..1941199 (-) 381 WP_244270805.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  HZ310_RS10200 (HZ310_10200) - 1941461..1942369 (-) 909 WP_180308905.1 serine protease -
  HZ310_RS10205 (HZ310_10205) - 1942566..1945709 (-) 3144 WP_180308906.1 bifunctional cytochrome P450/NADPH--P450 reductase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13767.39 Da        Isoelectric Point: 7.3831

>NTDB_id=466092 HZ310_RS10195 WP_244270805.1 1940819..1941199(-) (nucA/comI) [Bacillus pumilus strain UAMX]
MGTLLGGFGEEHAAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=466092 HZ310_RS10195 WP_244270805.1 1940819..1941199(-) (nucA/comI) [Bacillus pumilus strain UAMX]
ATGGGCACGCTGTTAGGTGGATTTGGAGAGGAACATGCGGCAAAAGGTGCGGATCGATATGATCATGTTATTCAATTTCC
AAAGGAACGGTACCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCATTCAGATGTGTGTACGATAGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGCATTCCGACTAAGCCTGGATTCGACCGAGATGAGTGGCCG
ATGGCAGTTTGTCTTGAAGGAGGAAAAGGGGCGAGTGTTCAATATGTCAGCCCGTCTGATAATAGGGGAGCAGGCTCATG
GGTCGGACACCAGATAAGTGGGTATCCTGATGGGAAAAGAATTTTATTTATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548