Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   HZ310_RS08825 Genome accession   NZ_CP058951
Coordinates   1671068..1671679 (-) Length   203 a.a.
NCBI ID   WP_169057213.1    Uniprot ID   -
Organism   Bacillus pumilus strain UAMX     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1666068..1676679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ310_RS08805 (HZ310_08805) - 1666385..1667089 (+) 705 WP_034661036.1 DnaD domain-containing protein -
  HZ310_RS08810 (HZ310_08810) nth 1667107..1667769 (+) 663 WP_012010351.1 endonuclease III -
  HZ310_RS08815 (HZ310_08815) - 1667766..1668275 (+) 510 WP_180310606.1 YpoC family protein -
  HZ310_RS08820 (HZ310_08820) - 1668310..1671024 (-) 2715 WP_180310607.1 PBP1A family penicillin-binding protein -
  HZ310_RS08825 (HZ310_08825) recU 1671068..1671679 (-) 612 WP_169057213.1 Holliday junction resolvase RecU Machinery gene
  HZ310_RS08830 (HZ310_08830) - 1671726..1672682 (+) 957 WP_180310608.1 DUF2515 domain-containing protein -
  HZ310_RS08835 (HZ310_08835) sspM 1672706..1672810 (-) 105 WP_012010346.1 acid-soluble spore protein SspM -
  HZ310_RS08840 (HZ310_08840) - 1673007..1673240 (+) 234 WP_257474628.1 YppD family protein -
  HZ310_RS08845 (HZ310_08845) - 1673298..1673669 (+) 372 WP_044141136.1 YppE family protein -
  HZ310_RS08850 (HZ310_08850) - 1673776..1674228 (+) 453 WP_058014840.1 YppG family protein -
  HZ310_RS08855 (HZ310_08855) - 1674249..1674668 (-) 420 WP_003215994.1 Hsp20/alpha crystallin family protein -
  HZ310_RS08860 (HZ310_08860) - 1674836..1675342 (+) 507 WP_144462821.1 PTS glucose transporter subunit IIA -
  HZ310_RS08865 (HZ310_08865) - 1675393..1676511 (-) 1119 WP_257474654.1 NADH-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23240.37 Da        Isoelectric Point: 8.9930

>NTDB_id=466091 HZ310_RS08825 WP_169057213.1 1671068..1671679(-) (recU) [Bacillus pumilus strain UAMX]
MIRYPNGKSYQPIQPIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSATSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
LNGRKSISKDELVEAGHLMTLGYSPRIDYIKVVETLHFSDESE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=466091 HZ310_RS08825 WP_169057213.1 1671068..1671679(-) (recU) [Bacillus pumilus strain UAMX]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACCAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGACTTAAATGAAACCAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCCGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGCGCTGCTGTGATCAAAGAAGCCTAC
TTTAAACAATCATCCACAACAGACTATAATGGAGTGTACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CGCCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCATTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTTTGGGAGCGGCAGAAG
CTAAACGGCCGAAAATCCATTAGTAAAGACGAATTAGTGGAAGCAGGCCACTTAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGTGAGTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

99.507

0.724