Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   HZ310_RS07350 Genome accession   NZ_CP058951
Coordinates   1407454..1408224 (+) Length   256 a.a.
NCBI ID   WP_034661344.1    Uniprot ID   -
Organism   Bacillus pumilus strain UAMX     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1402454..1413224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ310_RS07320 (HZ310_07320) - 1402762..1404873 (+) 2112 WP_371869448.1 HD family phosphohydrolase -
  HZ310_RS07325 (HZ310_07325) ybeY 1404874..1405353 (+) 480 WP_061408615.1 rRNA maturation RNase YbeY -
  HZ310_RS07330 (HZ310_07330) - 1405331..1405717 (+) 387 WP_044139413.1 diacylglycerol kinase family protein -
  HZ310_RS07335 (HZ310_07335) - 1405831..1406229 (+) 399 WP_180310504.1 cytidine deaminase -
  HZ310_RS07340 (HZ310_07340) era 1406222..1407127 (+) 906 WP_058014648.1 GTPase Era -
  HZ310_RS07345 (HZ310_07345) - 1407275..1407418 (+) 144 WP_003217288.1 YqzL family protein -
  HZ310_RS07350 (HZ310_07350) recO 1407454..1408224 (+) 771 WP_034661344.1 DNA repair protein RecO Machinery gene
  HZ310_RS07355 (HZ310_07355) glyQ 1408554..1409441 (+) 888 WP_012010611.1 glycine--tRNA ligase subunit alpha -
  HZ310_RS07360 (HZ310_07360) glyS 1409434..1411479 (+) 2046 WP_180310505.1 glycine--tRNA ligase subunit beta -
  HZ310_RS07365 (HZ310_07365) - 1411647..1412285 (+) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  HZ310_RS07370 (HZ310_07370) - 1412311..1413132 (+) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29244.92 Da        Isoelectric Point: 8.4348

>NTDB_id=466085 HZ310_RS07350 WP_034661344.1 1407454..1408224(+) (recO) [Bacillus pumilus strain UAMX]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMGGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=466085 HZ310_RS07350 WP_034661344.1 1407454..1408224(+) (recO) [Bacillus pumilus strain UAMX]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCGAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGAACC
ATTCGGGAGGATTTATTCTTGACCGCATATGCCGCATATATGACAGAGTTACTCGATAAAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTCCTGCTTCAATCTCTGCGTCATCTGAATGAAGGCACAGATGCTGATATTATCTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGAATGAAGCCCGAACTGGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTTCATTTCTCGATTAGAGACAACGGCTTTATTTGCCAAAATTGCTTTTCTAAAGATCCGTATAAACTGCCCTTATC
CCCAGCAGCTGCAAGGCTGCTCCGTTTATTTCATTATTTTGATTTATCAAGGCTCGGTCAGGTGGATGTGAAACCGCAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCACTACTATGAAGAGTATTCAGGCCTTTATTTGAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTCATGGGCGGGGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758