Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   HXV88_RS01590 Genome accession   NZ_CP058912
Coordinates   332910..334349 (+) Length   479 a.a.
NCBI ID   WP_088868291.1    Uniprot ID   -
Organism   Aeromonas veronii strain JC529     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 327910..339349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXV88_RS01560 (HXV88_01560) mlaF 328487..329287 (-) 801 WP_005336343.1 phospholipid ABC transporter ATP-binding protein MlaF -
  HXV88_RS01565 (HXV88_01565) - 329495..330490 (+) 996 WP_179902997.1 KpsF/GutQ family sugar-phosphate isomerase -
  HXV88_RS01570 (HXV88_01570) kdsC 330490..331044 (+) 555 WP_088868289.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  HXV88_RS01575 (HXV88_01575) lptC 331041..331601 (+) 561 WP_139460901.1 LPS export ABC transporter periplasmic protein LptC -
  HXV88_RS01580 (HXV88_01580) lptA 331588..332115 (+) 528 WP_040068817.1 lipopolysaccharide transport periplasmic protein LptA -
  HXV88_RS01585 (HXV88_01585) lptB 332119..332844 (+) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  HXV88_RS01590 (HXV88_01590) rpoN/rpoN1 332910..334349 (+) 1440 WP_088868291.1 RNA polymerase factor sigma-54 Machinery gene
  HXV88_RS01595 (HXV88_01595) hpf 334370..334657 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  HXV88_RS01600 (HXV88_01600) ptsN 334660..335106 (+) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  HXV88_RS01605 (HXV88_01605) rapZ 335152..336018 (+) 867 WP_179902998.1 RNase adapter RapZ -
  HXV88_RS01610 (HXV88_01610) npr 336039..336311 (+) 273 WP_005336318.1 PTS phosphocarrier protein NPr -
  HXV88_RS01615 (HXV88_01615) - 336329..338233 (-) 1905 WP_179902999.1 transcription antiterminator -
  HXV88_RS01620 (HXV88_01620) dagF 338340..339080 (-) 741 WP_179903000.1 2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53687.61 Da        Isoelectric Point: 4.3416

>NTDB_id=465947 HXV88_RS01590 WP_088868291.1 332910..334349(+) (rpoN/rpoN1) [Aeromonas veronii strain JC529]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVDMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=465947 HXV88_RS01590 WP_088868291.1 332910..334349(+) (rpoN/rpoN1) [Aeromonas veronii strain JC529]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCTCAGGAGCAGATGCCG
GACGAGTTGCCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACCGCCCAGAGCGCGGGCCCCATCCACGATGG
GGAAGATAGCGTCTATCAGGGTGAAACCACCGAAAACCTGCAGGATTATCTGCTGTGGCAGATGCGGCTCACACCGTTCA
GCGATGTGGATGCCGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGCGCTGGAGGAT
ATCCAGGCTGCCGTCACCAGCGATGACGTAGAGGTGGAACTCGATGAGGTCGAGGCGGTACTCAAGCGGGTTCAGCACTT
CGATCCGGTCGGCATTGCTGCCCGTTCTGTGCAGGAGTGTTTGCTTATCCAGCTGGATCAGTATGACCCGCAGACCCCCT
GGCTCAACGAAGCCAAGGAGGTGATCCTCGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAGCCGCGTCCCGGCAACGGCATCAT
CCAGAGTGACTCCCAGTACGTGATCCCCGACGTCTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTCGAGCTCAATCCCG
ACTCCGCCCCCCGCATCCGGGTCAACGAGACCTATGCTGCCATGGCCCGCAACGCCCGCAGCAGCACCGACACCCAGTTT
ATTCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAAAGTCGCAATGACACCCTGCTGAAAGTGGCCAG
TTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAATGACATCGCCG
AAGCGGTAGATATGCATGAGTCGACCATCTCCCGGGTGACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.988

100

0.491