Detailed information NTG0465767

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JQ464_RS24650
• Genome accession: NZ_CP069332
• Coordinates: 5312420..5313424 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain R08
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5307420..5318424

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JQ464_RS24635 (JQ464_24610)	-	5307903..5308910 (+)	1008	WP_010793357.1	TolB family protein	-
JQ464_RS24640 (JQ464_24615)	mutS	5309036..5311603 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
JQ464_RS24645 (JQ464_24620)	fdxA	5311670..5311993 (+)	324	WP_003119354.1	ferredoxin FdxA	-
JQ464_RS24650 (JQ464_24625)	rpoS	5312420..5313424 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
JQ464_RS24655 (JQ464_24630)	-	5313529..5314422 (-)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
JQ464_RS24660 (JQ464_24635)	-	5314468..5315103 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
JQ464_RS24665 (JQ464_24640)	surE	5315136..5315885 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
JQ464_RS24670 (JQ464_24645)	truD	5315873..5316940 (-)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
JQ464_RS24675 (JQ464_24650)	ispF	5316937..5317410 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JQ464_RS24680 (JQ464_24655)	fghA	5317481..5318332 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=465767 JQ464_RS24650 WP_003113871.1 5312420..5313424(-) (rpoS) [Pseudomonas aeruginosa strain R08]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=465767 JQ464_RS24650 WP_003113871.1 5312420..5313424(-) (rpoS) [Pseudomonas aeruginosa strain R08]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653