Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   JQ464_RS05025 Genome accession   NZ_CP069332
Coordinates   1067205..1067729 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain R08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1062205..1072729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQ464_RS05005 (JQ464_05005) - 1062272..1064743 (-) 2472 WP_003095841.1 penicillin-binding protein 1A -
  JQ464_RS05010 (JQ464_05010) pilM 1064928..1065992 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  JQ464_RS05015 (JQ464_05015) pilN 1065992..1066588 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  JQ464_RS05020 (JQ464_05020) pilO 1066585..1067208 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  JQ464_RS05025 (JQ464_05025) comL/pilP 1067205..1067729 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  JQ464_RS05030 (JQ464_05030) pilQ 1067783..1069927 (+) 2145 WP_003114575.1 type 4a pilus secretin PilQ Machinery gene
  JQ464_RS05035 (JQ464_05035) aroK 1069939..1070457 (+) 519 WP_003095833.1 shikimate kinase AroK -
  JQ464_RS05040 (JQ464_05040) aroB 1070507..1071613 (+) 1107 WP_003114574.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=465707 JQ464_RS05025 WP_003095836.1 1067205..1067729(+) (comL/pilP) [Pseudomonas aeruginosa strain R08]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=465707 JQ464_RS05025 WP_003095836.1 1067205..1067729(+) (comL/pilP) [Pseudomonas aeruginosa strain R08]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362