Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   JQ464_RS05015 Genome accession   NZ_CP069332
Coordinates   1065992..1066588 (+) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain R08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1060992..1071588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQ464_RS05005 (JQ464_05005) - 1062272..1064743 (-) 2472 WP_003095841.1 penicillin-binding protein 1A -
  JQ464_RS05010 (JQ464_05010) pilM 1064928..1065992 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  JQ464_RS05015 (JQ464_05015) pilN 1065992..1066588 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  JQ464_RS05020 (JQ464_05020) pilO 1066585..1067208 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  JQ464_RS05025 (JQ464_05025) comL/pilP 1067205..1067729 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  JQ464_RS05030 (JQ464_05030) pilQ 1067783..1069927 (+) 2145 WP_003114575.1 type 4a pilus secretin PilQ Machinery gene
  JQ464_RS05035 (JQ464_05035) aroK 1069939..1070457 (+) 519 WP_003095833.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=465705 JQ464_RS05015 WP_003095839.1 1065992..1066588(+) (pilN) [Pseudomonas aeruginosa strain R08]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=465705 JQ464_RS05015 WP_003095839.1 1065992..1066588(+) (pilN) [Pseudomonas aeruginosa strain R08]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369