Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HZT29_RS07310 Genome accession   NZ_CP058853
Coordinates   1541811..1542440 (+) Length   209 a.a.
NCBI ID   WP_000839152.1    Uniprot ID   -
Organism   Shigella flexneri strain STLEFF_38     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1536811..1547440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT29_RS07290 (HZT29_07245) - 1537212..1538972 (-) 1761 WP_000156518.1 Lon protease family protein -
  HZT29_RS07295 (HZT29_07250) matP 1539158..1539610 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HZT29_RS07300 (HZT29_07255) ompA 1539686..1540726 (-) 1041 WP_000750416.1 porin OmpA -
  HZT29_RS07305 (HZT29_07260) sulA 1541083..1541592 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HZT29_RS07310 (HZT29_07265) sxy/tfoX 1541811..1542440 (+) 630 WP_000839152.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HZT29_RS07315 (HZT29_07270) yccS 1542403..1544565 (-) 2163 WP_023281787.1 YccS family putative transporter -
  HZT29_RS07320 (HZT29_07275) - 1544575..1545021 (-) 447 WP_001261235.1 YccF domain-containing protein -
  HZT29_RS07325 (HZT29_07280) helD 1545144..1547198 (+) 2055 WP_033554506.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24093.97 Da        Isoelectric Point: 8.8133

>NTDB_id=465667 HZT29_RS07310 WP_000839152.1 1541811..1542440(+) (sxy/tfoX) [Shigella flexneri strain STLEFF_38]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVACRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=465667 HZT29_RS07310 WP_000839152.1 1541811..1542440(+) (sxy/tfoX) [Shigella flexneri strain STLEFF_38]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCATG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995