Detailed information NTG0465666

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JQ465_RS24650
• Genome accession: NZ_CP069331
• Coordinates: 5312725..5313729 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain R09
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5307725..5318729

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JQ465_RS24635 (JQ465_24605)	-	5308208..5309215 (+)	1008	WP_010793357.1	TolB family protein	-
JQ465_RS24640 (JQ465_24610)	mutS	5309341..5311908 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
JQ465_RS24645 (JQ465_24615)	fdxA	5311975..5312298 (+)	324	WP_003119354.1	ferredoxin FdxA	-
JQ465_RS24650 (JQ465_24620)	rpoS	5312725..5313729 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
JQ465_RS24655 (JQ465_24625)	-	5313834..5314727 (-)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
JQ465_RS24660 (JQ465_24630)	-	5314773..5315408 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
JQ465_RS24665 (JQ465_24635)	surE	5315441..5316190 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
JQ465_RS24670 (JQ465_24640)	truD	5316178..5317245 (-)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
JQ465_RS24675 (JQ465_24645)	ispF	5317242..5317715 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JQ465_RS24680 (JQ465_24650)	fghA	5317786..5318637 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=465666 JQ465_RS24650 WP_003113871.1 5312725..5313729(-) (rpoS) [Pseudomonas aeruginosa strain R09]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=465666 JQ465_RS24650 WP_003113871.1 5312725..5313729(-) (rpoS) [Pseudomonas aeruginosa strain R09]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653