Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HZT27_RS07310 Genome accession   NZ_CP058846
Coordinates   1541010..1541639 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella flexneri strain STLEFF_35     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1536010..1546639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT27_RS07290 (HZT27_07215) - 1536411..1538171 (-) 1761 WP_000156526.1 Lon protease family protein -
  HZT27_RS07295 (HZT27_07220) matP 1538357..1538809 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HZT27_RS07300 (HZT27_07225) ompA 1538885..1539925 (-) 1041 WP_134234915.1 porin OmpA -
  HZT27_RS07305 (HZT27_07230) sulA 1540282..1540791 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HZT27_RS07310 (HZT27_07235) sxy/tfoX 1541010..1541639 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HZT27_RS07315 (HZT27_07240) yccS 1541602..1543764 (-) 2163 WP_000875061.1 YccS family putative transporter -
  HZT27_RS07320 (HZT27_07245) - 1543774..1544220 (-) 447 WP_001261235.1 YccF domain-containing protein -
  HZT27_RS07325 (HZT27_07250) helD 1544343..1546397 (+) 2055 WP_134240191.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=465621 HZT27_RS07310 WP_000839153.1 1541010..1541639(+) (sxy/tfoX) [Shigella flexneri strain STLEFF_35]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=465621 HZT27_RS07310 WP_000839153.1 1541010..1541639(+) (sxy/tfoX) [Shigella flexneri strain STLEFF_35]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1