Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HZT18_RS13470 Genome accession   NZ_CP058826
Coordinates   2742226..2742855 (-) Length   209 a.a.
NCBI ID   WP_000839152.1    Uniprot ID   -
Organism   Shigella flexneri strain STLE1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2737226..2747855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT18_RS13455 (HZT18_13325) helD 2737468..2739522 (-) 2055 WP_001295354.1 DNA helicase IV -
  HZT18_RS13460 (HZT18_13330) - 2739645..2740091 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HZT18_RS13465 (HZT18_13335) yccS 2740101..2742263 (+) 2163 WP_023281787.1 YccS family putative transporter -
  HZT18_RS13470 (HZT18_13340) sxy/tfoX 2742226..2742855 (-) 630 WP_000839152.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HZT18_RS13475 (HZT18_13345) sulA 2743074..2743583 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HZT18_RS13480 (HZT18_13350) ompA 2743940..2744980 (+) 1041 WP_000750416.1 porin OmpA -
  HZT18_RS13485 (HZT18_13355) matP 2745056..2745508 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HZT18_RS13490 (HZT18_13360) - 2745694..2747454 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24093.97 Da        Isoelectric Point: 8.8133

>NTDB_id=465520 HZT18_RS13470 WP_000839152.1 2742226..2742855(-) (sxy/tfoX) [Shigella flexneri strain STLE1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVACRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=465520 HZT18_RS13470 WP_000839152.1 2742226..2742855(-) (sxy/tfoX) [Shigella flexneri strain STLE1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCATG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995