Detailed information NTG0465294

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JQ460_RS06740
• Genome accession: NZ_CP069328
• Coordinates: 1436133..1437137 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain R04
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1431133..1442137

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JQ460_RS06710 (JQ460_06695)	fghA	1431225..1432076 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
JQ460_RS06715 (JQ460_06700)	ispF	1432147..1432620 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JQ460_RS06720 (JQ460_06705)	truD	1432617..1433684 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
JQ460_RS06725 (JQ460_06710)	surE	1433672..1434421 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
JQ460_RS06730 (JQ460_06715)	-	1434454..1435089 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
JQ460_RS06735 (JQ460_06720)	-	1435135..1436028 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
JQ460_RS06740 (JQ460_06725)	rpoS	1436133..1437137 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
JQ460_RS06745 (JQ460_06730)	fdxA	1437564..1437887 (-)	324	WP_003119354.1	ferredoxin FdxA	-
JQ460_RS06750 (JQ460_06735)	mutS	1437954..1440521 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
JQ460_RS06755 (JQ460_06740)	-	1440647..1441654 (-)	1008	WP_010793357.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=465294 JQ460_RS06740 WP_003113871.1 1436133..1437137(+) (rpoS) [Pseudomonas aeruginosa strain R04]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=465294 JQ460_RS06740 WP_003113871.1 1436133..1437137(+) (rpoS) [Pseudomonas aeruginosa strain R04]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653