Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SSU1300283_RS09750 Genome accession   NZ_CP058741
Coordinates   1999514..2000227 (-) Length   237 a.a.
NCBI ID   WP_012774930.1    Uniprot ID   A0A142UPI2
Organism   Streptococcus suis strain 13-00283-02     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1994195..2028262 1999514..2000227 within 0
IS/Tn 2000402..2001691 1999514..2000227 flank 175


Gene organization within MGE regions


Location: 1994195..2028262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU1300283_RS09715 (SSU1300283_01972) - 1994195..1994452 (-) 258 WP_002935939.1 hypothetical protein -
  SSU1300283_RS09720 (SSU1300283_01973) - 1994499..1994876 (-) 378 WP_002935940.1 DUF1310 family protein -
  SSU1300283_RS09725 (SSU1300283_01974) - 1994902..1995165 (-) 264 WP_022540536.1 hypothetical protein -
  SSU1300283_RS09730 (SSU1300283_01975) - 1995158..1995550 (-) 393 WP_014636774.1 DUF1310 family protein -
  SSU1300283_RS09735 (SSU1300283_01976) - 1995716..1998049 (-) 2334 WP_014636773.1 endonuclease MutS2 -
  SSU1300283_RS09740 (SSU1300283_01977) - 1998600..1999148 (-) 549 WP_002935945.1 CvpA family protein -
  SSU1300283_RS09745 (SSU1300283_01978) - 1999145..1999456 (-) 312 WP_002935948.1 hypothetical protein -
  SSU1300283_RS09750 (SSU1300283_01979) treR 1999514..2000227 (-) 714 WP_012774930.1 trehalose operon repressor Regulator
  SSU1300283_RS09755 (SSU1300283_01980) - 2000402..2001691 (+) 1290 WP_014636745.1 IS4-like element ISSsu2 family transposase -
  SSU1300283_RS09760 (SSU1300283_01981) treP 2001974..2003968 (+) 1995 WP_002935953.1 PTS system trehalose-specific EIIBC component -
  SSU1300283_RS09765 (SSU1300283_01982) treC 2004049..2005674 (+) 1626 WP_002935955.1 alpha,alpha-phosphotrehalase -
  SSU1300283_RS09770 (SSU1300283_01983) - 2006088..2007212 (-) 1125 WP_002935956.1 LysM domain-containing protein -
  SSU1300283_RS09775 (SSU1300283_01984) - 2007555..2008538 (-) 984 WP_002935957.1 Gfo/Idh/MocA family protein -
  SSU1300283_RS09780 (SSU1300283_01985) rnhC 2008623..2009513 (+) 891 WP_014636770.1 ribonuclease HIII -
  SSU1300283_RS09785 (SSU1300283_01986) lepB 2009523..2010152 (+) 630 WP_002935959.1 signal peptidase I -
  SSU1300283_RS09790 (SSU1300283_01987) - 2010216..2012705 (+) 2490 WP_014636769.1 ATP-dependent RecD-like DNA helicase -
  SSU1300283_RS11015 - 2012744..2014805 (-) 2062 Protein_1922 heavy metal translocating P-type ATPase -
  SSU1300283_RS09810 (SSU1300283_01992) - 2014978..2015787 (-) 810 WP_002935966.1 hypothetical protein -
  SSU1300283_RS09815 (SSU1300283_01993) - 2015881..2016909 (-) 1029 WP_002935967.1 ABC transporter substrate-binding protein -
  SSU1300283_RS09820 (SSU1300283_01994) - 2016940..2017731 (-) 792 WP_002935969.1 ABC transporter ATP-binding protein -
  SSU1300283_RS09825 (SSU1300283_01995) - 2017716..2018474 (-) 759 WP_002935973.1 ABC transporter permease -
  SSU1300283_RS09830 (SSU1300283_01996) - 2018696..2019457 (-) 762 WP_002935974.1 hypothetical protein -
  SSU1300283_RS09835 (SSU1300283_01997) - 2019672..2022611 (-) 2940 WP_192109832.1 right-handed parallel beta-helix repeat-containing protein -
  SSU1300283_RS09840 (SSU1300283_01998) - 2022731..2024617 (-) 1887 WP_014636767.1 DUF4838 domain-containing protein -
  SSU1300283_RS09845 (SSU1300283_01999) - 2024622..2025950 (-) 1329 WP_002935977.1 PTS sugar transporter subunit IIC -
  SSU1300283_RS09850 (SSU1300283_02000) - 2026142..2027341 (+) 1200 WP_002935978.1 ROK family protein -
  SSU1300283_RS09855 (SSU1300283_02001) - 2027624..2028262 (-) 639 WP_002935979.1 endonuclease III domain-containing protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=465206 SSU1300283_RS09750 WP_012774930.1 1999514..2000227(-) (treR) [Streptococcus suis strain 13-00283-02]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=465206 SSU1300283_RS09750 WP_012774930.1 1999514..2000227(-) (treR) [Streptococcus suis strain 13-00283-02]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTAACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCAATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAACAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142UPI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515