Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SSU1300283_RS09750 Genome accession   NZ_CP058741
Coordinates   1999514..2000227 (-) Length   237 a.a.
NCBI ID   WP_012774930.1    Uniprot ID   A0A142UPI2
Organism   Streptococcus suis strain 13-00283-02     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1994514..2005227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU1300283_RS09725 (SSU1300283_01974) - 1994902..1995165 (-) 264 WP_022540536.1 hypothetical protein -
  SSU1300283_RS09730 (SSU1300283_01975) - 1995158..1995550 (-) 393 WP_014636774.1 DUF1310 family protein -
  SSU1300283_RS09735 (SSU1300283_01976) - 1995716..1998049 (-) 2334 WP_014636773.1 endonuclease MutS2 -
  SSU1300283_RS09740 (SSU1300283_01977) - 1998600..1999148 (-) 549 WP_002935945.1 CvpA family protein -
  SSU1300283_RS09745 (SSU1300283_01978) - 1999145..1999456 (-) 312 WP_002935948.1 hypothetical protein -
  SSU1300283_RS09750 (SSU1300283_01979) treR 1999514..2000227 (-) 714 WP_012774930.1 trehalose operon repressor Regulator
  SSU1300283_RS09755 (SSU1300283_01980) - 2000402..2001691 (+) 1290 WP_014636745.1 IS4-like element ISSsu2 family transposase -
  SSU1300283_RS09760 (SSU1300283_01981) treP 2001974..2003968 (+) 1995 WP_002935953.1 PTS system trehalose-specific EIIBC component -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=465206 SSU1300283_RS09750 WP_012774930.1 1999514..2000227(-) (treR) [Streptococcus suis strain 13-00283-02]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=465206 SSU1300283_RS09750 WP_012774930.1 1999514..2000227(-) (treR) [Streptococcus suis strain 13-00283-02]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTAACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCAATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAACAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515