Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SSU1300283_RS04460 Genome accession   NZ_CP058741
Coordinates   928505..930307 (+) Length   600 a.a.
NCBI ID   WP_009910108.1    Uniprot ID   -
Organism   Streptococcus suis strain 13-00283-02     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 923505..935307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU1300283_RS04445 (SSU1300283_00900) - 924518..925111 (-) 594 WP_002938116.1 DUF1361 domain-containing protein -
  SSU1300283_RS04450 (SSU1300283_00901) metG 925265..927268 (+) 2004 WP_002938113.1 methionine--tRNA ligase -
  SSU1300283_RS04455 (SSU1300283_00902) coiA 927332..928273 (+) 942 WP_192109891.1 competence protein CoiA Machinery gene
  SSU1300283_RS04460 (SSU1300283_00903) pepF 928505..930307 (+) 1803 WP_009910108.1 oligoendopeptidase F Regulator
  SSU1300283_RS04465 (SSU1300283_00904) - 930309..930749 (+) 441 WP_044667717.1 hypothetical protein -
  SSU1300283_RS04470 (SSU1300283_00905) - 930765..931313 (+) 549 WP_002938103.1 DUF6630 family protein -
  SSU1300283_RS04475 (SSU1300283_00906) - 931388..932107 (+) 720 WP_009910106.1 O-methyltransferase -
  SSU1300283_RS04480 (SSU1300283_00907) prsA 932168..933169 (+) 1002 WP_002938100.1 peptidylprolyl isomerase PrsA -
  SSU1300283_RS04485 (SSU1300283_00908) - 933434..933919 (+) 486 WP_002938099.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69190.34 Da        Isoelectric Point: 4.5534

>NTDB_id=465192 SSU1300283_RS04460 WP_009910108.1 928505..930307(+) (pepF) [Streptococcus suis strain 13-00283-02]
MSKQRYEIEEKYQWDLTTIFPTDDAWEAELADLQAETEKTKEFAGHLLDSAKSLLEISETQLSLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYAAFSQAFAFYEPEFMAITEEQLEAFKAEEPTLVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=465192 SSU1300283_RS04460 WP_009910108.1 928505..930307(+) (pepF) [Streptococcus suis strain 13-00283-02]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTGACTACTATTTTCCCAACCGATGATGCCTGGGA
AGCAGAACTTGCGGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTACTGGACTCAGCTAAAAGTC
TCTTAGAAATTAGCGAAACGCAACTTAGTCTTATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGCGAAGGAAAATATCAGGAATTTCAAGCTAAGGCCATGGGCTTGTATGCTGCCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAGCTGGAGGCCTTTAAGGCAGAAGAGCCTACTCTTGTTCAGT
ACAGCCACCAATTTGAAAAACTTCTGGCAGCCAAGGACCATGTCCTGTCACAAGAGGTGGAAGAAGTCCTTGCGGCAACC
AGCGAGATTTTTGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCTAGCCTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTGCCACTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGATGTCCGCCAAGAAG
CATACGAAGCTATGTACGGTACCTACGAGCAGTTCCAGCATACATACGCTAAGACCCTTCAGTCTAATGTCAAAGTCAAT
AACCTGAAAGCTCGTTTACGGAAGTATGACTCAGCTCGCCACGCATCACTTGCAGCTAATTTCATTCCAGAATCTGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCCTAGGTA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTCAGCACCAAGATTTCTTATGAAGATGCACTCAAG
AAATGCCAAGAAACCTTAGAAATCTTTGGTGAGGATTATTCGGCTATTGTGAAGGAAGCCTTCGAAAATCGCTGGATTGA
TGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATATTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAATTTGGATAACATGTACACCCTTATCCATGAAACAGGGCATTCTCTTCATTCCATGTTGACTCGTAAGACT
CAACCCTATGTCTATGGTCATTATTCCCTCTTCTTGGCAGAAATTGCTTCAACAACCAATGAAAATCTCCTAACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTTAACCATTACCTAGATGGTTTCCGTGGCACAGTCT
TCCGCCAGACACAATTTGCCGAGTTTGAACAAGCTATCTACAAGGCAGACCAGGAAGGTCAAGTCTTGACGGCTGATTTC
CTCAACGAATTGTACGGTCAGACAAACGAGAAATACTACGGACTTTCTGCCGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTTGCGGCTGCATCAGCTCTTGCAA
ACAAGATTGTCAACGGCAGTCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATTGCTAAAGCAGGTGTAGACATGACCAAGGAAGATTACCTCAACGACGCCTTTAAGGTTTTTGAGGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.833

100

0.698