Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   SSU1300283_RS03080 Genome accession   NZ_CP058741
Coordinates   631156..632205 (+) Length   349 a.a.
NCBI ID   WP_004194592.1    Uniprot ID   A0A0N0DPM5
Organism   Streptococcus suis strain 13-00283-02     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 626156..637205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU1300283_RS03045 (SSU1300283_00615) - 626477..627571 (+) 1095 WP_004194740.1 sensor histidine kinase -
  SSU1300283_RS03050 (SSU1300283_00616) - 627568..628170 (+) 603 WP_004194738.1 response regulator transcription factor -
  SSU1300283_RS03055 (SSU1300283_00617) - 628470..628688 (+) 219 WP_004194736.1 YqgQ family protein -
  SSU1300283_RS03060 (SSU1300283_00618) - 628688..629074 (+) 387 WP_004194735.1 rhodanese-like domain-containing protein -
  SSU1300283_RS03065 (SSU1300283_00619) - 629131..629853 (+) 723 WP_013730502.1 hypothetical protein -
  SSU1300283_RS03070 (SSU1300283_00620) rsmD 630152..630691 (+) 540 WP_009910569.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SSU1300283_RS03075 (SSU1300283_00621) coaD 630681..631169 (+) 489 WP_002939048.1 pantetheine-phosphate adenylyltransferase -
  SSU1300283_RS03080 (SSU1300283_00622) sepM 631156..632205 (+) 1050 WP_004194592.1 SepM family pheromone-processing serine protease Regulator
  SSU1300283_RS03085 (SSU1300283_00623) - 632393..633034 (+) 642 WP_004194595.1 YutD-like domain-containing protein -
  SSU1300283_RS03090 (SSU1300283_00624) rlmN 633043..634155 (+) 1113 WP_004194597.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  SSU1300283_RS03095 (SSU1300283_00625) - 634152..634679 (+) 528 WP_004194600.1 VanZ family protein -
  SSU1300283_RS03100 (SSU1300283_00626) nadE 635553..636377 (-) 825 WP_004194617.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37747.80 Da        Isoelectric Point: 4.6112

>NTDB_id=465183 SSU1300283_RS03080 WP_004194592.1 631156..632205(+) (sepM) [Streptococcus suis strain 13-00283-02]
MKKNRKLTLIASIVLGTLLIWFAVFVRLPYYLESPGGAADIRQVLTVNNQIDQEDGSYNFTYVSVQQATALQLFAAQFDP
YTTVRSSEEMTGGADNEEYFRIARFYMETSQNMAKYQGLTLAGKEVNLDFFGVYVLALTDDSTFKKVLNIADTVVSINGK
TFESSPDLIKYVSGLEVGSDVTVGYISAGQEKSADGKIIKLSNGKNGIGITLVDHTEVQSSVPIDFQTGDIGGPSAGLMF
TLAIYTQLAEPDLRDGRIIAGTGTIEQDGKVGDIGGADKKVISAAKSGASIFFVPNNPVDVEVLKKNPKAKTNYEEAKEA
AEKAGLDIEVVPVKTVQEAIDYLKKTKGE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=465183 SSU1300283_RS03080 WP_004194592.1 631156..632205(+) (sepM) [Streptococcus suis strain 13-00283-02]
ATGAAGAAAAATAGGAAGTTAACCTTAATTGCATCTATTGTTTTAGGAACTCTTTTGATTTGGTTTGCCGTTTTTGTTCG
TCTGCCTTATTATCTGGAAAGTCCAGGTGGAGCTGCCGATATTCGTCAGGTACTAACGGTGAACAATCAAATAGACCAAG
AGGATGGCTCTTACAACTTCACCTATGTATCAGTCCAACAAGCTACAGCTTTACAACTATTCGCTGCTCAGTTTGATCCC
TATACGACAGTTCGTTCCTCTGAAGAGATGACAGGAGGGGCCGACAATGAGGAGTATTTCCGTATAGCACGGTTTTACAT
GGAAACTTCGCAAAATATGGCGAAGTATCAAGGATTGACCTTGGCAGGAAAAGAAGTCAATCTTGATTTCTTTGGTGTCT
ATGTGCTTGCCTTGACGGATGATTCAACCTTTAAAAAAGTTCTTAATATTGCCGACACTGTTGTGAGTATCAATGGAAAA
ACATTTGAGTCTTCTCCTGATTTGATTAAATATGTGAGTGGCTTGGAGGTTGGAAGTGATGTAACAGTTGGTTATATTAG
CGCTGGTCAGGAAAAATCTGCGGACGGTAAGATTATCAAATTATCTAATGGCAAAAACGGAATAGGCATCACTCTCGTAG
ACCATACAGAGGTTCAAAGTTCGGTTCCAATTGATTTCCAAACGGGAGATATTGGTGGTCCAAGTGCTGGTCTGATGTTT
ACACTTGCCATCTATACTCAACTCGCAGAGCCTGACTTACGTGATGGTCGAATTATTGCTGGTACGGGGACTATCGAGCA
GGATGGAAAAGTAGGTGACATTGGTGGGGCTGATAAGAAGGTTATTTCGGCAGCTAAGTCAGGTGCAAGTATTTTTTTTG
TACCAAACAATCCAGTTGATGTAGAAGTTTTGAAGAAAAACCCAAAGGCTAAAACGAACTATGAAGAAGCTAAGGAAGCA
GCCGAGAAAGCAGGTCTAGATATTGAGGTAGTTCCTGTGAAAACTGTTCAAGAGGCTATTGATTATTTGAAGAAAACGAA
GGGCGAGTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(132-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N0DPM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

60.807

99.427

0.605