Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SSU1300283_RS02365 Genome accession   NZ_CP058741
Coordinates   486870..487364 (+) Length   164 a.a.
NCBI ID   WP_002942409.1    Uniprot ID   A0A075SLH4
Organism   Streptococcus suis strain 13-00283-02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 481870..492364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU1300283_RS02340 (SSU1300283_00473) - 482671..483258 (+) 588 WP_044667473.1 histidine phosphatase family protein -
  SSU1300283_RS02345 (SSU1300283_00474) - 483270..483887 (+) 618 WP_002937720.1 histidine phosphatase family protein -
  SSU1300283_RS02350 (SSU1300283_00475) - 483884..485323 (+) 1440 WP_002937719.1 6-phospho-beta-glucosidase -
  SSU1300283_RS02355 (SSU1300283_00476) - 485407..486396 (+) 990 WP_044667471.1 lipoate--protein ligase -
  SSU1300283_RS02360 (SSU1300283_00477) rpsF 486568..486858 (+) 291 WP_002942403.1 30S ribosomal protein S6 -
  SSU1300283_RS02365 (SSU1300283_00478) ssbA 486870..487364 (+) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  SSU1300283_RS02370 (SSU1300283_00479) rpsR 487397..487636 (+) 240 WP_002939250.1 30S ribosomal protein S18 -
  SSU1300283_RS02375 (SSU1300283_00480) - 487973..488629 (-) 657 WP_002939249.1 DUF1129 domain-containing protein -
  SSU1300283_RS02380 (SSU1300283_00481) - 488645..489589 (-) 945 WP_002939248.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18102.87 Da        Isoelectric Point: 4.7294

>NTDB_id=465181 SSU1300283_RS02365 WP_002942409.1 486870..487364(+) (ssbA) [Streptococcus suis strain 13-00283-02]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=465181 SSU1300283_RS02365 WP_002942409.1 486870..487364(+) (ssbA) [Streptococcus suis strain 13-00283-02]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACACGT
AGCTATGATAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTATAACTCGCCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAGAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SLH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366