Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SSU16085_RS01235 Genome accession   NZ_CP058740
Coordinates   234767..235480 (+) Length   237 a.a.
NCBI ID   WP_012774930.1    Uniprot ID   A0A142UPI2
Organism   Streptococcus suis strain 16085/3b     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 229767..240480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU16085_RS01225 (SSU16085_00252) treC 230834..232459 (-) 1626 WP_002935955.1 alpha,alpha-phosphotrehalase -
  SSU16085_RS01230 (SSU16085_00253) treP 232540..234534 (-) 1995 WP_002935953.1 PTS system trehalose-specific EIIBC component -
  SSU16085_RS01235 (SSU16085_00254) treR 234767..235480 (+) 714 WP_012774930.1 trehalose operon repressor Regulator
  SSU16085_RS01240 (SSU16085_00255) - 235538..235849 (+) 312 WP_002935948.1 hypothetical protein -
  SSU16085_RS01245 (SSU16085_00256) - 235846..236394 (+) 549 WP_002935945.1 CvpA family protein -
  SSU16085_RS01250 (SSU16085_00257) - 236815..239148 (+) 2334 WP_002935942.1 endonuclease MutS2 -
  SSU16085_RS01255 (SSU16085_00258) - 239172..239825 (+) 654 WP_024406824.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=465137 SSU16085_RS01235 WP_012774930.1 234767..235480(+) (treR) [Streptococcus suis strain 16085/3b]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=465137 SSU16085_RS01235 WP_012774930.1 234767..235480(+) (treR) [Streptococcus suis strain 16085/3b]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTAACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCAATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAACAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142UPI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515